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Silencing Near TRNA Genes Requires Nucleolar Localization

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2005 Jan 18
PMID 15654076
Citations 43
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Abstract

Transcription by RNA polymerase II is antagonized by the presence of a nearby tRNA gene in Saccharomyces cerevisiae. To test hypotheses concerning the mechanism of this tRNA gene-mediated (tgm) silencing, the effects of specific gene deletions were determined. The results show that the mechanism of silencing near tRNA genes is fundamentally different from other forms of transcriptional silencing in yeast. Rather, tgm silencing is dependent on the ability to cluster the dispersed tRNA genes in or near the nucleolus, constituting a form of three-dimensional gene control.

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References
1.
Oakes M, Siddiqi I, Vu L, ARIS J, Nomura M . Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA. Mol Cell Biol. 1999; 19(12):8559-69. PMC: 84978. DOI: 10.1128/MCB.19.12.8559. View

2.
Smith J, Caputo E, Boeke J . A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors. Mol Cell Biol. 1999; 19(4):3184-97. PMC: 84112. DOI: 10.1128/MCB.19.4.3184. View

3.
Siddiqi I, Dodd J, Vu L, Eliason K, Oakes M, Keener J . Transcription of chromosomal rRNA genes by both RNA polymerase I and II in yeast uaf30 mutants lacking the 30 kDa subunit of transcription factor UAF. EMBO J. 2001; 20(16):4512-21. PMC: 125573. DOI: 10.1093/emboj/20.16.4512. View

4.
Heun P, Laroche T, Shimada K, Furrer P, Gasser S . Chromosome dynamics in the yeast interphase nucleus. Science. 2001; 294(5549):2181-6. DOI: 10.1126/science.1065366. View

5.
Bryk M, Briggs S, Strahl B, Curcio M, Allis C, Winston F . Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism. Curr Biol. 2002; 12(2):165-70. DOI: 10.1016/s0960-9822(01)00652-2. View