» Articles » PMID: 14659685

Error Thresholds and the Constraints to RNA Virus Evolution

Overview
Date 2003 Dec 9
PMID 14659685
Citations 145
Authors
Affiliations
Soon will be listed here.
Abstract

RNA viruses are often thought of as possessing almost limitless adaptability as a result of their extreme mutation rates. However, high mutation rates also put a cap on the size of the viral genome by establishing an error threshold, beyond which lethal numbers of deleterious mutations accumulate. Herein, I argue that a lack of genomic space means that RNA viruses will be subject to important evolutionary constraints because specific sequences are required to encode multiple and often conflicting functions. Empirical evidence for these constraints, and how they limit viral adaptability, is now beginning to accumulate. Documenting the constraints to RNA virus evolution has important implications for predicting the emergence of new viruses and for improving therapeutic procedures.

Citing Articles

Structural and Phylogenetic Analysis on the Proofreading Activity of SARS-CoV-2.

Ghosh S, Biswas S, Mohanty R, Misra N, Suar M, Kushwaha G Curr Microbiol. 2025; 82(4):149.

PMID: 39992393 DOI: 10.1007/s00284-025-04130-3.


Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.

Glasner D, Todd C, Cook B, DUrso A, Khosla S, Estrada E bioRxiv. 2025; .

PMID: 39990370 PMC: 11844544. DOI: 10.1101/2025.02.11.637299.


Analysis of NS2-dependent effects on influenza PB1 segment extends replication requirements beyond the canonical promoter.

Swaminath S, Mendes M, Zhang Y, Remick K, Mejia I, Guereca M Nat Commun. 2025; 16(1):1875.

PMID: 39987189 PMC: 11846981. DOI: 10.1038/s41467-025-57092-2.


Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses.

Neuman B, Smart A, Gilmer O, Smyth R, Vaas J, Boker N Proc Natl Acad Sci U S A. 2025; 122(7):e2413675122.

PMID: 39928875 PMC: 11848433. DOI: 10.1073/pnas.2413675122.


Genome sizes of animal RNA viruses reflect phylogenetic constraints.

Takada K, Holmes E Virus Evol. 2025; 11(1):veaf005.

PMID: 39906303 PMC: 11792653. DOI: 10.1093/ve/veaf005.


References
1.
Chesebro B, Wehrly K, Nishio J, Perryman S . Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism. J Virol. 1992; 66(11):6547-54. PMC: 240149. DOI: 10.1128/JVI.66.11.6547-6554.1992. View

2.
Messenger S, Molineux I, Bull J . Virulence evolution in a virus obeys a trade-off. Proc Biol Sci. 1999; 266(1417):397-404. PMC: 1689683. DOI: 10.1098/rspb.1999.0651. View

3.
Malpica J, Fraile A, Moreno I, Obies C, Drake J, Garcia-Arenal F . The rate and character of spontaneous mutation in an RNA virus. Genetics. 2003; 162(4):1505-11. PMC: 1462378. DOI: 10.1093/genetics/162.4.1505. View

4.
Ruiz-Jarabo C, Ly C, Domingo E, de la Torre J . Lethal mutagenesis of the prototypic arenavirus lymphocytic choriomeningitis virus (LCMV). Virology. 2003; 308(1):37-47. DOI: 10.1016/s0042-6822(02)00046-6. View

5.
Cunningham C, Jeng K, Husti J, Badgett M, Molineux I, Hillis D . Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7. Mol Biol Evol. 1997; 14(1):113-6. DOI: 10.1093/oxfordjournals.molbev.a025697. View