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Structural Organization of Guanosine Derivatives in Dilute Solutions: Small Angle Neutron Scattering Analysis

Overview
Journal Eur Biophys J
Specialty Biophysics
Date 1992 Jan 1
PMID 1396405
Citations 3
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Abstract

Guanosine derivatives, dissolved in water, can form cholesteric and hexagonal mesophases. The common structural unit is a chiral rod-shaped aggregate consisting of a stack of Hoogsten-bonded guanosine tetrameric disks. In order to elucidate the self-association process, we decided to investigate, by small-angle neutron scattering, the structural properties of d(pG), d(GpG), d(GpGpG), d(GpGpGpG) and d(GpGpGpG pGpG) derivatives in very dilute solutions. Under our experimental conditions only d(pG) seems not to form detectable particles. On the other hand, the results for the other derivatives indicate that cylindrical aggregates, having a 10 A cross-section gyration radius and a length of about 70 A, exist in the isotropic phase. According to the structure of the hexagonal and cholesteric phases, we fitted the experimental data by using a model of rod-shaped aggregates formed by stacking about 18 to 20 guanosine tetramers. Moreover, from the measurement of the concentration of scattering particles, we deduced that guanosine derivatives are only partially aggregated, depending on their ability to form mesophases.

Citing Articles

K vs. Na Effects on the Self-Assembly of Guanosine 5'-Monophosphate: A Solution SAXS Structural Study.

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Guanosine quadruplexes in solution: a small-angle x-ray scattering analysis of temperature effects on self-assembling of deoxyguanosine monophosphate.

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Dynamic light scattering and 31P NMR study of the self-assembly of deoxyguanosine 5'-monophosphate: the effect of added salt.

Spindler L, Drevensek-Olenik I, copic M, Cerar J, Skerjanc J, Mariani P Eur Phys J E Soft Matter. 2004; 13(1):27-33.

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References
1.
Sundquist W, Klug A . Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops. Nature. 1989; 342(6251):825-9. DOI: 10.1038/342825a0. View

2.
Abis , Caciuffo , Carsughi , Coppola , Magnani , Rustichelli . Late stages of delta ' precipitation in an Al-Li alloy by small-angle neutron scattering. Phys Rev B Condens Matter. 1990; 42(4):2275-2281. DOI: 10.1103/physrevb.42.2275. View

3.
Perkins S, Chung L, Reid K . Unusual ultrastructure of complement-component-C4b-binding protein of human complement by synchrotron X-ray scattering and hydrodynamic analysis. Biochem J. 1986; 233(3):799-807. PMC: 1153101. DOI: 10.1042/bj2330799. View

4.
Jin R, Breslauer K, Jones R, Gaffney B . Tetraplex formation of a guanine-containing nonameric DNA fragment. Science. 1990; 250(4980):543-6. DOI: 10.1126/science.2237404. View

5.
Zimmerman S . X-ray study by fiber diffraction methods of a self-aggregate of guanosine-5'-phosphate with the same helical parameters as poly(rG). J Mol Biol. 1976; 106(3):663-72. DOI: 10.1016/0022-2836(76)90257-6. View