» Articles » PMID: 12957948

A Gene Cluster for Chlorate Metabolism in Ideonella Dechloratans

Overview
Date 2003 Sep 6
PMID 12957948
Citations 33
Authors
Affiliations
Soon will be listed here.
Abstract

Chlorate reductase has been isolated from the chlorate-respiring bacterium Ideonella dechloratans, and the genes encoding the enzyme have been sequenced. The enzyme is composed of three different subunits and contains molybdopterin, iron, probably in iron-sulfur clusters, and heme b. The genes (clr) encoding chlorate reductase are arranged as clrABDC, where clrA, clrB, and clrC encode the subunits and clrD encodes a specific chaperone. Judging from the subunit composition, cofactor content, and sequence comparisons, chlorate reductase belongs to class II of the dimethyl sulfoxide reductase family. The clr genes are preceded by a novel insertion sequence (transposase gene surrounded by inverted repeats), denoted ISIde1. Further upstream, we find the previously characterized gene for chlorite dismutase (cld), oriented in the opposite direction. Chlorate metabolism in I. dechloratans starts with the reduction of chlorate, which is followed by the decomposition of the resulting chlorite to chloride and molecular oxygen. The present work reveals that the genes encoding the enzymes catalyzing both these reactions are in close proximity.

Citing Articles

The iPhylo suite: an interactive platform for building and annotating biological and chemical taxonomic trees.

Li Y, Peng C, Chi F, Huang Z, Yuan M, Zhou X Brief Bioinform. 2024; 26(1).

PMID: 39737565 PMC: 11684897. DOI: 10.1093/bib/bbae679.


History of Maturation of Prokaryotic Molybdoenzymes-A Personal View.

Magalon A Molecules. 2023; 28(20).

PMID: 37894674 PMC: 10609526. DOI: 10.3390/molecules28207195.


Impact of the Dimethyl Sulfoxide Reductase Superfamily on the Evolution of Biogeochemical Cycles.

Wells M, Kim M, Akob D, Basu P, Stolz J Microbiol Spectr. 2023; :e0414522.

PMID: 36951557 PMC: 10100899. DOI: 10.1128/spectrum.04145-22.


Bromate reduction by MR-1 is mediated by dimethylsulfoxide reductase.

Wang Y, Fan J, Shen Y, Ye F, Feng Z, Yang Q Front Microbiol. 2022; 13:955249.

PMID: 36110297 PMC: 9468665. DOI: 10.3389/fmicb.2022.955249.


Transcriptome analysis provides new insights into the tolerance and aerobic reduction of Shewanella decolorationis Ni1-3 to bromate.

Wang Y, Cai X, Fan J, Wang D, Mao Y Appl Microbiol Biotechnol. 2022; 106(12):4749-4761.

PMID: 35708750 DOI: 10.1007/s00253-022-12006-w.


References
1.
Adams B, Smith A, Bailey S, McEwan A, Bray R . Reactions of dimethylsulfoxide reductase from Rhodobacter capsulatus with dimethyl sulfide and with dimethyl sulfoxide: complexities revealed by conventional and stopped-flow spectrophotometry. Biochemistry. 1999; 38(26):8501-11. DOI: 10.1021/bi9902034. View

2.
Trieber C, Rothery R, Weiner J . Engineering a novel iron-sulfur cluster into the catalytic subunit of Escherichia coli dimethyl-sulfoxide reductase. J Biol Chem. 1996; 271(9):4620-6. DOI: 10.1074/jbc.271.9.4620. View

3.
Jones R, Garland P . Sites and specificity of the reaction of bipyridylium compounds with anaerobic respiratory enzymes of Escherichia coli. Effects of permeability barriers imposed by the cytoplasmic membrane. Biochem J. 1977; 164(1):199-211. PMC: 1164775. DOI: 10.1042/bj1640199. View

4.
Kengen S, Rikken G, Hagen W, van Ginkel C, Stams A . Purification and characterization of (per)chlorate reductase from the chlorate-respiring strain GR-1. J Bacteriol. 1999; 181(21):6706-11. PMC: 94135. DOI: 10.1128/JB.181.21.6706-6711.1999. View

5.
Fish W . Rapid colorimetric micromethod for the quantitation of complexed iron in biological samples. Methods Enzymol. 1988; 158:357-64. DOI: 10.1016/0076-6879(88)58067-9. View