Polar Mutations in Membrane Proteins As a Biophysical Basis for Disease
Overview
Affiliations
Transmembrane (TM) alpha-helices are surrounded by the hydrocarbon chains of the lipid bilayer. The low dielectric constant of this environment makes it extremely unfavorable for a residue with a polar side chain to exist in a non-H-bonded state. Therefore, in combination with a wild-type polar residue partner, a polar TM mutant could generate, in some cases, a non-native H-bond that could impair native protein structure/function-and possibly lead to a disease state. We have examined protein mutation databases and have found many examples of TM-based apolar to polar mutations that are, in fact, a cause of human disease. Here we review the various molecular defects that such mutations can produce, including impeding protein dynamics by side-chain-side-chain interhelical H-bond cross-links; alteration of helical packing through steric hindrance; and disruption of a protein active site. We further note that the reverse case--membrane-embedded polar to apolar mutations--can similarly cause human disease, implying that native interhelical H-bonds can also play pivotal roles in stabilizing native TM domains. As a specific example, we show that the Gly to Arg mutation occurs statistically more frequently in TM domains as compared to its occurrence in soluble domains, suggesting that TM-based G-to-R mutations have a high "phenotypic propensity" for disease. A more complete understanding of how mutations involving polar residues in TM domains of proteins translate into compromised function may aid in the development of novel therapeutics.
Cho S, Yun Y, Lee D, Cha J, Lee S, Lee J BMC Med Genomics. 2023; 16(1):320.
PMID: 38066485 PMC: 10704677. DOI: 10.1186/s12920-023-01766-7.
Ending a bad start: Triggers and mechanisms of co-translational protein degradation.
Eisenack T, Trentini D Front Mol Biosci. 2023; 9:1089825.
PMID: 36660423 PMC: 9846516. DOI: 10.3389/fmolb.2022.1089825.
Principal component analysis of alpha-helix deformations in transmembrane proteins.
Bevacqua A, Bakshi S, Xia Y PLoS One. 2021; 16(9):e0257318.
PMID: 34525125 PMC: 8443038. DOI: 10.1371/journal.pone.0257318.
Promoting crystallization of intrinsic membrane proteins with conjugated micelles.
Truong T, Ghosh M, Wachtel E, Friedman N, Jung K, Sheves M Sci Rep. 2020; 10(1):12199.
PMID: 32699228 PMC: 7376161. DOI: 10.1038/s41598-020-68689-6.
Marinko J, Huang H, Penn W, Capra J, Schlebach J, Sanders C Chem Rev. 2019; 119(9):5537-5606.
PMID: 30608666 PMC: 6506414. DOI: 10.1021/acs.chemrev.8b00532.