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Primary Sequence of the 16S Ribosomal RNA of Escherichia Coli

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Specialty Biochemistry
Date 1975 Feb 1
PMID 1091918
Citations 41
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Abstract

Recent progress in the nucleotide sequence analysis of the 16S ribosomal RNA from E. coli is described. The sequence which has been partially or completely determined so far encompasses 1520 nucleotides, i.e. about 95% of the molecule. Possible features of the secondary structure are suggested on the basis of the nucleotide sequence and data on sequence heterogeneities, repetitions and the location of modified nucleotides are presented. In the accompanying paper, the use of the nucleotide sequence data in studies of the ribosomal protein binding sites is described.

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References
1.
Young R . The fractionation of quaternary ammonium complexes of nucleic acids. Evidence for heterogeneity of ribosomal ribonucleic acid. Biochemistry. 1968; 7(6):2263-72. DOI: 10.1021/bi00846a032. View

2.
Ortega J, Hill W . A molecular weight determination of the 16S ribosomal ribonucleic acid from Escherichia coli. Biochemistry. 1973; 12(17):3241-3. DOI: 10.1021/bi00741a015. View

3.
Stanley Jr W, Bock R . Isolation and physical properties of the ribosomal ribonucleic acid of Escherichia coli. Biochemistry. 1965; 4(7):1302-11. DOI: 10.1021/bi00883a014. View

4.
Helser T, Davies J, Dahlberg J . Mechanism of kasugamycin resistance in Escherichia coli. Nat New Biol. 1972; 235(53):6-9. DOI: 10.1038/newbio235006a0. View

5.
TAKANAMI M . Analysis of the 5'-terminal nucleotide sequences of ribonucleic acids 1. the 5'-termini of Excherichia coli ribosomal RNA. J Mol Biol. 1967; 23(2):135-48. DOI: 10.1016/s0022-2836(67)80022-6. View