Yana Rose
Overview
Explore the profile of Yana Rose including associated specialties, affiliations and a list of published articles.
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Articles
14
Citations
1007
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0
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Recent Articles
1.
Piehl D, Vallat B, Truong I, Morsy H, Bhatt R, Blaumann S, et al.
J Mol Biol
. 2025 Feb;
:168970.
PMID: 39894387
The Protein Data Bank (PDB) was founded in 1971 as the first open-access digital data resource in biology to serve as the single global archive for three-dimensional (3D) macromolecular structure...
2.
Burley S, Bhatt R, Bhikadiya C, Bi C, Biester A, Biswas P, et al.
Nucleic Acids Res
. 2024 Nov;
53(D1):D564-D574.
PMID: 39607707
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to...
3.
Bittrich S, Segura J, Duarte J, Burley S, Rose Y
Bioinformatics
. 2024 Jun;
40(6).
PMID: 38870521
Motivation: Tools for pairwise alignments between 3D structures of proteins are of fundamental importance for structural biology and bioinformatics, enabling visual exploration of evolutionary and functional relationships. However, the absence...
4.
Segura J, Rose Y, Bi C, Duarte J, Burley S, Bittrich S
Front Bioinform
. 2023 Dec;
3:1311287.
PMID: 38111685
Recent advances in Artificial Intelligence and Machine Learning (., AlphaFold, RosettaFold, and ESMFold) enable prediction of three-dimensional (3D) protein structures from amino acid sequences alone at accuracies comparable to lower-resolution...
5.
Bittrich S, Bhikadiya C, Bi C, Chao H, Duarte J, Dutta S, et al.
J Mol Biol
. 2023 Feb;
435(14):167994.
PMID: 36738985
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) provides open access to experimentally-determined three-dimensional (3D) structures of biomolecules. The RCSB PDB RCSB.org research-focused web portal is used...
6.
Burley S, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, et al.
Nucleic Acids Res
. 2022 Nov;
51(D1):D488-D508.
PMID: 36420884
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center for the open-access PDB archive....
7.
Burley S, Berman H, Duarte J, Feng Z, Flatt J, Hudson B, et al.
Biomolecules
. 2022 Oct;
12(10).
PMID: 36291635
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the United States National Science Foundation, National Institutes of Health, and Department of Energy, supports structural biologists...
8.
Burley S, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, et al.
Protein Sci
. 2022 Oct;
31(12):e4482.
PMID: 36281733
Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open-access global archive housing three-dimensional (3D) biomolecular structure data. It is jointly managed by...
9.
Segura J, Rose Y, Bittrich S, Burley S, Duarte J
Bioinformatics
. 2022 May;
38(12):3304-3305.
PMID: 35543462
Motivation: Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better...
10.
Shao C, Westbrook J, Lu C, Bhikadiya C, Peisach E, Young J, et al.
Structure
. 2022 Jan;
30(2):252-262.e4.
PMID: 35026162
More than 70% of the experimentally determined macromolecular structures in the Protein Data Bank (PDB) contain small-molecule ligands. Quality indicators of ∼643,000 ligands present in ∼106,000 PDB X-ray crystal structures...