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Tony Burdett

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Articles 48
Citations 8009
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Recent Articles
1.
Adli M, Przybyla L, Burdett T, Burridge P, Cacheiro P, Chang H, et al.
Nature . 2025 Feb; 638(8050):351-359. PMID: 39939790
Recent advances in functional genomics and human cellular models have substantially enhanced our understanding of the structure and regulation of the human genome. However, our grasp of the molecular functions...
2.
Kapoor M, Ventura E, Walsh A, Sokolov A, George N, Kumari S, et al.
Front Genet . 2024 Dec; 15:1460351. PMID: 39678381
Introduction: The agriculture genomics community has numerous data submission standards available, but the standards for describing and storing single-cell (SC, e.g., scRNA- seq) data are comparatively underdeveloped. Methods: To bridge...
3.
OCathail C, Ahamed A, Burgin J, Cummins C, Devaraj R, Gueye K, et al.
Nucleic Acids Res . 2024 Nov; 53(D1):D49-D55. PMID: 39558171
The European Nucleotide Archive (ENA, https://www.ebi.ac.uk/ena), maintained at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) provides freely accessible services, both for deposition of, and access to, open nucleotide...
4.
Karsch-Mizrachi I, Arita M, Burdett T, Cochrane G, Nakamura Y, Pruitt K, et al.
Nucleic Acids Res . 2024 Nov; 53(D1):D62-D66. PMID: 39535044
The members of the International Nucleotide Sequence Database Collaboration (INSDC; https://insdc.org) have built systems to collect, archive and disseminate sequence data for more than four decades. The three collaborating organizations,...
5.
Rahman N, OCathail C, Zyoud A, Sokolov A, Oude Munnink B, Gruning B, et al.
Microb Genom . 2024 Feb; 10(2). PMID: 38358325
The COVID-19 pandemic has seen large-scale pathogen genomic sequencing efforts, becoming part of the toolbox for surveillance and epidemic research. This resulted in an unprecedented level of data sharing to...
6.
Wittner R, Holub P, Mascia C, Frexia F, Muller H, Plass M, et al.
Learn Health Syst . 2024 Jan; 8(1):e10365. PMID: 38249839
Open and practical exchange, dissemination, and reuse of specimens and data have become a fundamental requirement for life sciences research. The quality of the data obtained and thus the findings...
7.
George N, Fexova S, Fuentes A, Madrigal P, Bi Y, Iqbal H, et al.
Nucleic Acids Res . 2023 Nov; 52(D1):D107-D114. PMID: 37992296
Expression Atlas (www.ebi.ac.uk/gxa) and its newest counterpart the Single Cell Expression Atlas (www.ebi.ac.uk/gxa/sc) are EMBL-EBI's knowledgebases for gene and protein expression and localisation in bulk and at single cell level....
8.
Yuan D, Ahamed A, Burgin J, Cummins C, Devraj R, Gueye K, et al.
Nucleic Acids Res . 2023 Nov; 52(D1):D92-D97. PMID: 37956313
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena) is maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI). The ENA is one of the three members of the International Nucleotide...
9.
Welter D, Rocca-Serra P, Groues V, Sallam N, Ancien F, Shabani A, et al.
Sci Data . 2023 Jul; 10(1):470. PMID: 37474618
The discoverability of datasets resulting from the diverse range of translational and biomedical projects remains sporadic. It is especially difficult for datasets emerging from pre-competitive projects, often due to the...
10.
Rocca-Serra P, Gu W, Ioannidis V, Abbassi-Daloii T, Capella-Gutierrez S, Chandramouliswaran I, et al.
Sci Data . 2023 May; 10(1):292. PMID: 37208467
The notion that data should be Findable, Accessible, Interoperable and Reusable, according to the FAIR Principles, has become a global norm for good data stewardship and a prerequisite for reproducibility....