Taiyun Kim
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Explore the profile of Taiyun Kim including associated specialties, affiliations and a list of published articles.
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14
Citations
169
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Recent Articles
1.
Ribeiro R, Senior A, Simpson S, Tan J, Raubenheimer D, Le Couteur D, et al.
Aging Cell
. 2024 Jul;
23(11):e14276.
PMID: 39011855
Plant-based diets reduces the risk of chronic conditions. The interaction between protein source and other macronutrients-fat (F) and carbohydrate (C)-has yet to be investigated. The aim was to assess the...
2.
Kott K, Chan A, Vernon S, Hansen T, Kim T, de Dreu M, et al.
Clin Transl Immunology
. 2023 Nov;
12(11):e1462.
PMID: 37927302
Objective: The importance of inflammation in atherosclerosis is well accepted, but the role of the adaptive immune system is not yet fully understood. To further explore this, we assessed the...
3.
Kim T, Kim H, Oldfield A, Yang P
STAR Protoc
. 2023 Mar;
4(2):102203.
PMID: 37000617
Characterizing transcription factor (TF) genomic colocalization is essential for identifying cooperative binding of TFs in controlling gene expression. Here, we introduce a protocol for using PAD2, an interactive web application...
4.
Kim H, Li P, Kim T, Oldfield A, Zheng X, Yang P
iScience
. 2022 Sep;
25(10):105049.
PMID: 36124234
Lysine-specific demethylase 1 (LSD1) is well-known for its role in decommissioning enhancers during mouse embryonic stem cell (ESC) differentiation. Its role in gene promoters remains poorly understood despite its widespread...
5.
Kim T, Tang O, Vernon S, Kott K, Koay Y, Park J, et al.
Nat Commun
. 2021 Aug;
12(1):4992.
PMID: 34404777
Liquid chromatography-mass spectrometry-based metabolomics studies are increasingly applied to large population cohorts, which run for several weeks or even years in data acquisition. This inevitably introduces unwanted intra- and inter-batch...
6.
Kim H, Kim T, Xiao D, Yang P
STAR Protoc
. 2021 Jun;
2(2):100585.
PMID: 34151303
Analysis of phosphoproteomic data requires advanced computational methodologies. To this end, we developed PhosR, a set of tools and methodologies implemented in R to allow the comprehensive analysis of phosphoproteomic...
7.
Vernon S, Tang O, Kim T, Chan A, Kott K, Park J, et al.
Cells
. 2021 Apr;
10(5).
PMID: 33922315
Despite effective prevention programs targeting cardiovascular risk factors, coronary artery disease (CAD) remains the leading cause of death. Novel biomarkers are needed for improved risk stratification and primary prevention. To...
8.
Sutherland K, Almeida F, Kim T, Brown E, Knapman F, Ngiam J, et al.
J Clin Sleep Med
. 2021 Apr;
17(9):1785-1792.
PMID: 33847557
Study Objectives: Oral appliance (OA) therapy usage can be objectively measured through temperature-sensing data chips embedded in the appliance. Initial reports of group data for short-term treatment usage suggest good...
9.
Kim H, Kim T, Hoffman N, Xiao D, James D, Humphrey S, et al.
Cell Rep
. 2021 Feb;
34(8):108771.
PMID: 33626354
Mass spectrometry (MS)-based phosphoproteomics has revolutionized our ability to profile phosphorylation-based signaling in cells and tissues on a global scale. To infer the action of kinases and signaling pathways in...
10.
Kim T, Lo K, Geddes T, Kim H, Yang J, Yang P
BMC Genomics
. 2019 Dec;
20(Suppl 9):913.
PMID: 31874628
Background: Single-cell RNA-sequencing (scRNA-seq) is a fast emerging technology allowing global transcriptome profiling on the single cell level. Cell type identification from scRNA-seq data is a critical task in a...