Stefan Hiendleder
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Explore the profile of Stefan Hiendleder including associated specialties, affiliations and a list of published articles.
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Articles
39
Citations
712
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Recent Articles
1.
Macphillamy C, Chen T, Hiendleder S, Williams J, Alinejad-Rokny H, Low W
Gigascience
. 2024 Oct;
13.
PMID: 39435573
Background: Most DNA methylation studies have used a single reference genome with little attention paid to the bias introduced due to the reference chosen. Reference genome artifacts and genetic variation,...
2.
Estrella C, Gatford K, Xiang R, Javadmanesh A, Ghanipoor-Samami M, Nattrass G, et al.
Front Endocrinol (Lausanne)
. 2024 Feb;
14:1306513.
PMID: 38362586
Introduction: Sex differences in prenatal growth may contribute to sex-dependent programming effects on postnatal phenotype. Methods: We integrated for the first time phenotypic, histomorphological, clinico-chemical, endocrine and gene expression analyses...
3.
Macphillamy C, Ren Y, Chen T, Hiendleder S, Low W
Front Genet
. 2024 Jan;
14:1329939.
PMID: 38162682
MicroRNAs (miRNAs) play a crucial role in regulating gene expression during key developmental processes, including fetal development. Brahman () and Angus () cattle breeds represent two major cattle subspecies with...
4.
Ren Y, Tseng E, Smith T, Hiendleder S, Williams J, Low W
BMC Genomics
. 2023 Mar;
24(1):108.
PMID: 36915055
The Iso-Seq method of full-length cDNA sequencing is suitable to quantify differentially expressed genes (DEGs), transcripts (DETs) and transcript usage (DTU). However, the higher cost of Iso-Seq relative to RNA-seq...
5.
Low W, Rosen B, Ren Y, Bickhart D, To T, Martin F, et al.
BMC Genomics
. 2022 May;
23(1):344.
PMID: 35508966
Background: The gaur (Bos gaurus) is the largest extant wild bovine species, native to South and Southeast Asia, with unique traits, and is listed as vulnerable by the International Union...
6.
Marsh L, Hutchinson M, McLaughlan C, Musolino S, Hebart M, Terry R, et al.
Animals (Basel)
. 2021 Aug;
11(7).
PMID: 34359180
The ability to assess the welfare of animals is dependent on our ability to accurately determine their emotional (affective) state, with particular emphasis being placed on the identification of positive...
7.
Bebbere D, Ulbrich S, Giller K, Zakhartchenko V, Reichenbach H, Reichenbach M, et al.
Front Cell Dev Biol
. 2021 Jun;
9:664099.
PMID: 34124044
Somatic cell nuclear transfer (SCNT) is a key technology with broad applications that range from production of cloned farm animals to derivation of patient-matched stem cells or production of humanized...
8.
Liu R, Tearle R, Low W, Chen T, Thomsen D, Smith T, et al.
BMC Genomics
. 2021 Jun;
22(1):410.
PMID: 34082698
Background: There are two genetically distinct subspecies of cattle, Bos taurus taurus and Bos taurus indicus, which arose from independent domestication events. The two types of cattle show substantial phenotypic...
9.
Kronenberg Z, Rhie A, Koren S, Concepcion G, Peluso P, Munson K, et al.
Nat Commun
. 2021 Apr;
12(1):1935.
PMID: 33911078
Haplotype-resolved genome assemblies are important for understanding how combinations of variants impact phenotypes. To date, these assemblies have been best created with complex protocols, such as cultured cells that contain...
10.
Low W, Tearle R, Liu R, Koren S, Rhie A, Bickhart D, et al.
Nat Commun
. 2020 May;
11(1):2071.
PMID: 32350247
Inbred animals were historically chosen for genome analysis to circumvent assembly issues caused by haplotype variation but this resulted in a composite of the two genomes. Here we report a...