Shuichi Kawashima
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Explore the profile of Shuichi Kawashima including associated specialties, affiliations and a list of published articles.
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42
Citations
8163
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Recent Articles
11.
Aoki-Kinoshita K, Kinjo A, Morita M, Igarashi Y, Chen Y, Shigemoto Y, et al.
J Biomed Semantics
. 2015 May;
6:3.
PMID: 25973165
Background: Linked Data has gained some attention recently in the life sciences as an effective way to provide and share data. As a part of the Semantic Web, data are...
12.
Kotera M, Nishimura Y, Nakagawa Z, Muto A, Moriya Y, Okamoto S, et al.
J Bioinform Comput Biol
. 2014 Nov;
12(6):1442001.
PMID: 25385078
Genomics is faced with the issue of many partially annotated putative enzyme-encoding genes for which activities have not yet been verified, while metabolomics is faced with the issue of many...
13.
Yamagishi J, Natori A, Tolba M, Mongan A, Sugimoto C, Katayama T, et al.
Genome Res
. 2014 Aug;
24(9):1433-44.
PMID: 25091627
To understand the molecular mechanisms of parasitism in vivo, it is essential to elucidate how the transcriptomes of the human hosts and the infecting parasites affect one another. Here we...
14.
Katayama T, Wilkinson M, Aoki-Kinoshita K, Kawashima S, Yamamoto Y, Yamaguchi A, et al.
J Biomed Semantics
. 2014 Feb;
5(1):5.
PMID: 24495517
The application of semantic technologies to the integration of biological data and the interoperability of bioinformatics analysis and visualization tools has been the common theme of a series of annual...
15.
Katayama T, Wilkinson M, Micklem G, Kawashima S, Yamaguchi A, Nakao M, et al.
J Biomed Semantics
. 2013 Feb;
4(1):6.
PMID: 23398680
Background: BioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series...
16.
Nakaya A, Katayama T, Itoh M, Hiranuka K, Kawashima S, Moriya Y, et al.
Nucleic Acids Res
. 2012 Nov;
41(Database issue):D353-7.
PMID: 23193276
The identification of orthologous genes in an increasing number of fully sequenced genomes is a challenging issue in recent genome science. Here we present KEGG OC (http://www.genome.jp/tools/oc/), a novel database...
17.
Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, et al.
mBio
. 2012 Sep;
3(5):e00204-12.
PMID: 22951932
We sequenced the genome of Theileria orientalis, a tick-borne apicomplexan protozoan parasite of cattle. The focus of this study was a comparative genome analysis of T. orientalis relative to other...
18.
Katayama T, Wilkinson M, Vos R, Kawashima T, Kawashima S, Nakao M, et al.
J Biomed Semantics
. 2011 Aug;
2:4.
PMID: 21806842
Background: The interaction between biological researchers and the bioinformatics tools they use is still hampered by incomplete interoperability between such tools. To ensure interoperability initiatives are effectively deployed, end-user applications...
19.
Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita K, Yamamoto Y, et al.
J Biomed Semantics
. 2010 Aug;
1(1):8.
PMID: 20727200
Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems...
20.
Imada M, Kawashima S, Kanehisa M, Takeuchi T, Asai T
Parasitol Int
. 2010 Feb;
59(2):206-10.
PMID: 20153838
The Toxoplasma gondii genome project has revealed two putative isoforms (TgPGM-I and TgPGM-II) of alpha-phosphoglucomutase (EC 5.4.2.2). We obtained recombinant proteins of these isoforms from the Beverley strain of T....