Shoichi Tanimoto
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Explore the profile of Shoichi Tanimoto including associated specialties, affiliations and a list of published articles.
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7
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20
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0
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Recent Articles
1.
Tanimoto S, Okumura H
ACS Chem Neurosci
. 2024 Jul;
15(15):2925-2935.
PMID: 39009034
Polyglutamine (polyQ) diseases are devastating neurodegenerative disorders characterized by abnormal expansion of glutamine repeats within specific proteins. The aggregation of polyQ proteins is a critical pathological hallmark of these diseases....
2.
State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2
Tanimoto S, Itoh S, Okumura H
Int J Mol Sci
. 2022 Sep;
23(18).
PMID: 36142270
Molecular dynamics (MD) simulations are powerful theoretical methods that can reveal biomolecular properties, such as structure, fluctuations, and ligand binding, at the level of atomic detail. In this review article,...
3.
Tanimoto S, Itoh S, Okumura H
Biophys J
. 2021 Aug;
120(17):3615-3627.
PMID: 34339634
The RNA-dependent RNA polymerase (RdRp) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a promising drug target for coronavirus disease 2019 (COVID-19) because it plays the most important role...
4.
Itoh S, Tanimoto S, Okumura H
Chem Phys Lett
. 2021 Jun;
778:138819.
PMID: 34127868
One of the promising drug targets against COVID-19 is an RNA-dependent RNA polymerase (RdRp) of SARS-CoV-2. The tertiary structures of the SARS-CoV-2 and SARS-CoV RdRps are almost the same. However,...
5.
Tanimoto S, Tamura K, Hayashi S, Yoshida N, Nakano H
J Comput Chem
. 2021 Jan;
42(8):552-563.
PMID: 33433010
A computational method to investigate the global conformational change of a protein is proposed by combining the linear response path following (LRPF) method and three-dimensional reference interaction site model (3D-RISM)...
6.
Tanimoto S, Yoshida N, Yamaguchi T, Ten-No S, Nakano H
J Chem Inf Model
. 2019 Aug;
59(9):3770-3781.
PMID: 31408604
The effect of molecular orientational correlations on the solvation free energy (SFE) of one-dimensional and three-dimensional reference interaction site models (1D- and 3D-RISM) is investigated. The repulsive bridge correction (RBC)...
7.
Tanimoto S, Higashi M, Yoshida N, Nakano H
J Phys Condens Matter
. 2016 Jul;
28(34):344005.
PMID: 27366974
The molecular recognition process of the carbohydrate-binding module family 36 (CBM36) was examined theoretically. The mechanism of xylan binding by CBM36 and the role of Ca(2+) were investigated by the...