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Sean D Hooper

Explore the profile of Sean D Hooper including associated specialties, affiliations and a list of published articles. Areas
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Articles 30
Citations 2563
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Recent Articles
1.
Jiao X, Hooper S, Djureinovic T, Larsson C, Warnberg F, Tellgren-Roth C, et al.
BMC Genomics . 2013 Mar; 14:165. PMID: 23496902
Background: Chromosomal rearrangements in the form of deletions, insertions, inversions and translocations are frequently observed in breast cancer genomes, and a subset of these rearrangements may play a crucial role...
2.
Hooper S, Johansson A, Tellgren-Roth C, Stattin E, Dahl N, Cavelier L, et al.
BMC Med Genet . 2012 Dec; 13:123. PMID: 23253088
Background: Tourette Syndrome (TS) is a neuropsychiatric disorder in children characterized by motor and verbal tics. Although several genes have been suggested in the etiology of TS, the genetic mechanisms...
3.
Hooper S, Jiao X, Sundstrom E, Rehman F, Tellgren-Roth C, Sjoblom T, et al.
BMC Res Notes . 2012 Nov; 5:648. PMID: 23171647
Background: Double-hit lymphoma is a complex and highly aggressive sub-type of B-cell lymphoma, which has recently been classified and is an area of active research interest due to the poor...
4.
Mansouri L, Gunnarsson R, Sutton L, Ameur A, Hooper S, Mayrhofer M, et al.
Am J Hematol . 2012 Jun; 87(7):737-40. PMID: 22674506
Advances in next-generation RNA-sequencing have revealed the complexity of transcriptomes by allowing both coding and noncoding(nc)RNAs to be analyzed. However, limited data exist regarding the whole transcriptional landscape of chronic...
5.
Pavlopoulos G, Hooper S, Sifrim A, Schneider R, Aerts J
BMC Res Notes . 2011 Oct; 4:384. PMID: 21978489
Background: Biological processes such as metabolic pathways, gene regulation or protein-protein interactions are often represented as graphs in systems biology. The understanding of such networks, their analysis, and their visualization...
6.
Jiao X, Rosenlund M, Hooper S, Tellgren-Roth C, He L, Fu Y, et al.
PLoS One . 2011 Jul; 6(7):e22250. PMID: 21799804
Comprehensive identification of the acquired mutations that cause common cancers will require genomic analyses of large sets of tumor samples. Typically, the tissue material available from tumor specimens is limited,...
7.
Anderson I, Scheuner C, Goker M, Mavromatis K, Hooper S, Porat I, et al.
PLoS One . 2011 Jun; 6(5):e20237. PMID: 21633497
Background: The extremely halophilic archaea are present worldwide in saline environments and have important biotechnological applications. Ten complete genomes of haloarchaea are now available, providing an opportunity for comparative analysis....
8.
Pati A, Ivanova N, Mikhailova N, Ovchinnikova G, Hooper S, Lykidis A, et al.
Nat Methods . 2010 May; 7(6):455-7. PMID: 20436475
We present 'gene prediction improvement pipeline' (GenePRIMP; http://geneprimp.jgi-psf.org/), a computational process that performs evidence-based evaluation of gene models in prokaryotic genomes and reports anomalies including inconsistent start sites, missed genes...
9.
Lykidis A, Perez-Pantoja D, Ledger T, Mavromatis K, Anderson I, Ivanova N, et al.
PLoS One . 2010 Mar; 5(3):e9729. PMID: 20339589
Background: Cupriavidus necator JMP134 is a Gram-negative beta-proteobacterium able to grow on a variety of aromatic and chloroaromatic compounds as its sole carbon and energy source. Methodology/principal Findings: Its genome...
10.
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova N, et al.
Nature . 2009 Dec; 462(7276):1056-60. PMID: 20033048
Sequencing of bacterial and archaeal genomes has revolutionized our understanding of the many roles played by microorganisms. There are now nearly 1,000 completed bacterial and archaeal genomes available, most of...