Sagar A Pandit
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Explore the profile of Sagar A Pandit including associated specialties, affiliations and a list of published articles.
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35
Citations
638
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Recent Articles
11.
Kumar A, Grupcev V, Berrada M, Fogarty J, Tu Y, Zhu X, et al.
J Big Data
. 2015 Jun;
2(1):9.
PMID: 26069879
Molecular Simulation (MS) is a powerful tool for studying physical/chemical features of large systems and has seen applications in many scientific and engineering domains. During the simulation process, the experiments...
12.
Fogarty J, Arjunwadkar M, Pandit S, Pan J
Biochim Biophys Acta
. 2014 Dec;
1848(2):662-72.
PMID: 25448879
We present a new atom density profile (ADP) model and a statistical approach for extracting structural characteristics of lipid bilayers from X-ray and neutron scattering data. Models for five lipids...
13.
Pradhan G, Pandit S, van Schaik C
Am J Phys Anthropol
. 2014 Aug;
155(3):430-5.
PMID: 25100507
Our closest nonhuman primate relatives, chimpanzees, engage in potentially lethal between-group conflict; this collective aggressive behavior shows parallels with human warfare. In some communities, chimpanzee males also severely attack and...
14.
Fogarty J, Chiu S, Kirby P, Jakobsson E, Pandit S
J Phys Chem B
. 2014 Jan;
118(6):1603-11.
PMID: 24460506
We have developed an automated parameter optimization software framework (ParOpt) that implements the Nelder-Mead simplex algorithm and applied it to a coarse-grained polarizable water model. The model employs a tabulated,...
15.
Bennett C, Kruczek J, Rabson D, Matthews W, Pandit S
J Phys Condens Matter
. 2013 Jun;
25(28):285101.
PMID: 23751928
Cross-linking between the constituent chains of biopolymers has a marked effect on their materials' properties. In certain of these materials, such as fibrillar collagen, increases in cross-linking lead to an...
16.
Metcalf R, Pandit S
J Phys Chem B
. 2012 Mar;
116(15):4500-9.
PMID: 22390271
Ceramide is the simplest molecule in the class of glycosphingolipids composed of a sphingosine backbone and acyl moiety. It plays significant roles in cell signaling; apoptosis; binding of hormones, toxins,...
17.
Tumaneng P, Pandit S, Zhao G, Scott H
Phys Rev E Stat Nonlin Soft Matter Phys
. 2011 Apr;
83(3 Pt 1):031925.
PMID: 21517541
The connection between membrane inhomogeneity and the structural basis of lipid rafts has sparked interest in the lateral organization of model lipid bilayers of two and three components. In an...
18.
Lyon J, Pandit S, van Schaik C, Pradhan G
J Theor Biol
. 2011 Jan;
274(1):103-8.
PMID: 21255585
Infanticide by newly immigrated or newly dominant males is reported among a variety of taxa, such as birds, rodents, carnivores and primates. Here we present a game theoretical model to...
19.
Fogarty J, Aktulga H, Grama A, van Duin A, Pandit S
J Chem Phys
. 2010 May;
132(17):174704.
PMID: 20459180
We report our study of a silica-water interface using reactive molecular dynamics. This first-of-its-kind simulation achieves length and time scales required to investigate the detailed chemistry of the system. Our...
20.
Tumaneng P, Pandit S, Zhao G, Scott H
J Chem Phys
. 2010 Feb;
132(6):065104.
PMID: 20151760
The organizational properties of complex lipid mixtures can give rise to functionally important structures in cell membranes. In model membranes, ternary lipid-cholesterol (CHOL) mixtures are often used as representative systems...