Robert Petryszak
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Explore the profile of Robert Petryszak including associated specialties, affiliations and a list of published articles.
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28
Citations
3048
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Recent Articles
11.
Papatheodorou I, Fonseca N, Keays M, Tang Y, Barrera E, Bazant W, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D246-D251.
PMID: 29165655
Expression Atlas (http://www.ebi.ac.uk/gxa) is an added value database that provides information about gene and protein expression in different species and contexts, such as tissue, developmental stage, disease or cell type....
12.
Tello-Ruiz M, Naithani S, Stein J, Gupta P, Campbell M, Olson A, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D1181-D1189.
PMID: 29165610
Gramene (http://www.gramene.org) is a knowledgebase for comparative functional analysis in major crops and model plant species. The current release, #54, includes over 1.7 million genes from 44 reference genomes, most...
13.
Gupta P, Naithani S, Tello-Ruiz M, Chougule K, DEustachio P, Fabregat A, et al.
Curr Plant Biol
. 2017 Jul;
7-8:10-15.
PMID: 28713666
Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and...
14.
Perez-Riverol Y, Bai M, Veiga Leprevost F, Squizzato S, Park Y, Haug K, et al.
Nat Biotechnol
. 2017 May;
35(5):406-409.
PMID: 28486464
No abstract available.
15.
Petryszak R, Fonseca N, Fullgrabe A, Huerta L, Keays M, Tang Y, et al.
Bioinformatics
. 2017 Apr;
33(14):2218-2220.
PMID: 28369191
Motivation: The exponential growth of publicly available RNA-sequencing (RNA-Seq) data poses an increasing challenge to researchers wishing to discover, analyse and store such data, particularly those based in institutions with...
16.
Koscielny G, An P, Carvalho-Silva D, Cham J, Fumis L, Gasparyan R, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D985-D994.
PMID: 27899665
We have designed and developed a data integration and visualization platform that provides evidence about the association of known and potential drug targets with diseases. The platform is designed to...
17.
Naithani S, Preece J, DEustachio P, Gupta P, Amarasinghe V, Dharmawardhana P, et al.
Nucleic Acids Res
. 2016 Nov;
45(D1):D1029-D1039.
PMID: 27799469
Plant Reactome (http://plantreactome.gramene.org/) is a free, open-source, curated plant pathway database portal, provided as part of the Gramene project. The database provides intuitive bioinformatics tools for the visualization, analysis and...
18.
Tello-Ruiz M, Stein J, Wei S, Preece J, Olson A, Naithani S, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D1133-40.
PMID: 26553803
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant...
19.
Petryszak R, Keays M, Tang Y, Fonseca N, Barrera E, Burdett T, et al.
Nucleic Acids Res
. 2015 Oct;
44(D1):D746-52.
PMID: 26481351
Expression Atlas (http://www.ebi.ac.uk/gxa) provides information about gene and protein expression in animal and plant samples of different cell types, organism parts, developmental stages, diseases and other conditions. It consists of...
20.
Frankish A, Uszczynska B, Ritchie G, Gonzalez J, Pervouchine D, Petryszak R, et al.
BMC Genomics
. 2015 Jun;
16 Suppl 8:S2.
PMID: 26110515
Background: A vast amount of DNA variation is being identified by increasingly large-scale exome and genome sequencing projects. To be useful, variants require accurate functional annotation and a wide range...