Rasmus Nielsen
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Explore the profile of Rasmus Nielsen including associated specialties, affiliations and a list of published articles.
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317
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Recent Articles
1.
Altinkaya I, Nielsen R, Korneliussen T
Bioinformatics
. 2025 Mar;
PMID: 40045175
Motivation: Accurate quantification of genotype uncertainty is pivotal in ensuring the reliability of genetic inferences drawn from NGS data. Genotype uncertainty is typically modeled using Genotype Likelihoods (GLs), which can...
2.
Deng Y, Song Y, Nielsen R
bioRxiv
. 2025 Feb;
PMID: 39990503
Inference of Ancestral Recombination Graphs (ARGs) is of central interest in the analysis of genomic variation. ARGs can be specified in terms of topologies and coalescence times. The coalescence times...
3.
Andrista S, Utami N, Hukom V, Nielsen M, Nielsen R
J Environ Manage
. 2025 Feb;
377:124593.
PMID: 39987869
Climate change poses challenges to the global agricultural systems. The threat is more significant for small-scale farmers who constitute 40% of global and 29% of Indonesian farmers, playing a pivotal...
4.
Staeger F, Andersen M, Li Z, Hjerresen J, He S, Santander C, et al.
Nature
. 2025 Feb;
639(8054):404-410.
PMID: 39939757
Greenlandic Inuit and other indigenous populations are underrepresented in genetic research, leading to inequity in healthcare opportunities. To address this, we performed analyses of sequenced or imputed genomes of 5,996...
5.
Zhang C, Nielsen R
bioRxiv
. 2025 Feb;
PMID: 39896589
The advent of affordable whole-genome sequencing has spurred numerous large-scale projects aimed at inferring the tree of life, yet achieving a complete species-level phylogeny remains a distant goal due to...
6.
Brandt D, Del Brutto O, Nielsen R
G3 (Bethesda)
. 2025 Jan;
PMID: 39873398
Atahualpa is a rural village located in coastal Ecuador, a region that has been inhabited by people as early as 10,000 years ago. The traditional diet of their indigenous inhabitants...
7.
Zhang C, Nielsen R, Mirarab S
Science
. 2025 Jan;
387(6737):eadk9688.
PMID: 39847611
Genomes contain mosaics of discordant evolutionary histories, challenging the accurate inference of the tree of life. Although genome-wide data are routinely used for discordance-aware phylogenomic analyses, because of modeling and...
8.
Deng Y, Nielsen R, Song Y
Genetics
. 2024 Dec;
229(1):1-3.
PMID: 39679949
It was recently reported that a severe ancient bottleneck occurred around 900 thousand years ago in the ancestry of African populations, while this signal is absent in non-African populations. Here,...
9.
Yediay F, Kroonen G, Sabatini S, Frei K, Frank A, Pinotti T, et al.
bioRxiv
. 2024 Dec;
PMID: 39677618
The Indo-European languages are among the most widely spoken in the world, yet their early diversification remains contentious. It is widely accepted that the spread of this language family across...
10.
Naeser K, Nielsen R
J Cataract Refract Surg
. 2024 Nov;
51(3):182-187.
PMID: 39602360
Purpose: To compare the prediction errors (PEs) of several thick intraocular lens (IOL) formulas with a thin lens approach using variations of the same paraxial vergence calculation formula. Setting: Department...