Rafael S Goncalves
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Explore the profile of Rafael S Goncalves including associated specialties, affiliations and a list of published articles.
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9
Citations
94
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Recent Articles
1.
Goncalves R, Payne J, Tan A, Benitez C, Haddock J, Gentleman R
Database (Oxford)
. 2024 Nov;
2024.
PMID: 39607847
There is an ongoing need for scalable tools to aid researchers in both retrospective and prospective standardization of discrete entity types-such as disease names, cell types, or chemicals-that are used...
2.
Tan A, Goncalves R, Yuan W, Brat G, Gentleman R, Kohane I
JAMIA Open
. 2024 Nov;
7(4):ooae118.
PMID: 39559493
Objective: Integrating electronic health record (EHR) data with other resources is essential in rare disease research due to low disease prevalence. Such integration is dependent on the alignment of ontologies...
3.
Geistlinger L, Mirzayi C, Zohra F, Azhar R, Elsafoury S, Grieve C, et al.
Nat Biotechnol
. 2023 Sep;
42(5):790-802.
PMID: 37697152
The literature of human and other host-associated microbiome studies is expanding rapidly, but systematic comparisons among published results of host-associated microbiome signatures of differential abundance remain difficult. We present BugSigDB,...
4.
Miron L, Goncalves R, Musen M
Sci Data
. 2020 Dec;
7(1):443.
PMID: 33339830
Metadata that are structured using principled schemas and that use terms from ontologies are essential to making biomedical data findable and reusable for downstream analyses. The largest source of metadata...
5.
Goncalves R, OConnor M, Martinez-Romero M, Egyedi A, Willrett D, Graybeal J, et al.
Semant Web ISWC
. 2020 Mar;
10588:103-110.
PMID: 32219223
The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have developed-the CEDAR Workbench-is a suite...
6.
Barbosa D, Menegidio F, Alencar V, Goncalves R, Silva J, Vilas Boas R, et al.
PLoS Negl Trop Dis
. 2019 Jul;
13(7):e0007576.
PMID: 31306428
Background: The genus Paracoccidioides consists of thermodymorphic fungi responsible for Paracoccidioidomycosis (PCM), a systemic mycosis that has been registered to affect ~10 million people in Latin America. Biogeographical data subdivided...
7.
Goncalves R, Musen M
Sci Data
. 2019 Feb;
6:190021.
PMID: 30778255
We present an analytical study of the quality of metadata about samples used in biomedical experiments. The metadata under analysis are stored in two well-known databases: BioSample-a repository managed by...
8.
Parsia B, Matentzoglu N, Goncalves R, Glimm B, Steigmiller A
J Autom Reason
. 2018 Aug;
59(4):455-482.
PMID: 30069067
The OWL Reasoner Evaluation competition is an annual competition (with an associated workshop) that pits OWL 2 compliant reasoners against each other on various standard reasoning tasks over naturally occurring...
9.
Goncalves R, Tu S, Nyulas C, Tierney M, Musen M
J Biomed Semantics
. 2017 Aug;
8(1):26.
PMID: 28764813
Background: Structured data acquisition is a common task that is widely performed in biomedicine. However, current solutions for this task are far from providing a means to structure data in...