Pier Paolo Di Nocera
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Explore the profile of Pier Paolo Di Nocera including associated specialties, affiliations and a list of published articles.
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20
Citations
338
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Recent Articles
11.
De Gregorio E, Bertocco T, Silvestro G, Carlomagno M, Zarrilli R, Di Nocera P
FEMS Microbiol Lett
. 2009 Feb;
292(1):7-12.
PMID: 19222577
Enterococcus faecalis/faecium repeats (EFARs) are miniature insertion sequences spread in the genome of Enterococcus faecalis and Enterococcus faecium. Unit-length repeats measure 165-170 bp and contain two modules (B and T)...
12.
Roscetto E, Rocco F, Carlomagno M, Casalino M, Colonna B, Zarrilli R, et al.
BMC Microbiol
. 2008 Nov;
8:202.
PMID: 19025624
Background: All bacterial genomes contain repetitive sequences which are members of specific DNA families. Such repeats may occur as single units, or found clustered in multiple copies in a head-to-tail...
13.
Cozzuto L, Petrillo M, Silvestro G, Di Nocera P, Paolella G
BMC Genomics
. 2008 Jan;
9:20.
PMID: 18201379
Background: Analysis of non-coding sequences in several bacterial genomes brought to the identification of families of repeated sequences, able to fold as secondary structures. These sequences have often been claimed...
14.
Venditti R, De Gregorio E, Silvestro G, Bertocco T, Salza M, Zarrilli R, et al.
FEMS Microbiol Lett
. 2007 Apr;
271(2):193-201.
PMID: 17425667
The structural organization of Enterococcus faecalis repeats (EFAR) is described, palindromic DNA sequences identified in the genome of the Enterococcus faecalis V583 strain by in silico analyses. EFAR are a...
15.
De Gregorio E, Silvestro G, Venditti R, Carlomagno M, Di Nocera P
J Bacteriol
. 2006 Sep;
188(22):7876-84.
PMID: 16963573
YPALs (Yersinia palindromic sequences) are miniature DNA insertions scattered along the chromosomes of yersiniae. The spread of these intergenic repeats likely occurred via transposition, as suggested by the presence of...
16.
Petrillo M, Silvestro G, Di Nocera P, Boccia A, Paolella G
BMC Genomics
. 2006 Jul;
7:170.
PMID: 16820051
Background: Prediction of secondary structures in the expressed sequences of bacterial genomes allows to investigate spontaneous folding of the corresponding RNA. This is particularly relevant in untranslated mRNA regions, where...
17.
De Gregorio E, Silvestro G, Petrillo M, Carlomagno M, Di Nocera P
J Bacteriol
. 2005 Nov;
187(23):7945-54.
PMID: 16291667
Genome-wide analyses carried out in silico revealed that the DNA repeats called enterobacterial repetitive intergenic consensus sequences (ERICs), which are present in several Enterobacteriaceae, are overrepresented in yersiniae. From the...
18.
De Gregorio E, Abrescia C, Carlomagno M, Di Nocera P
Biochem J
. 2003 Jun;
374(Pt 3):799-805.
PMID: 12826014
Approx. 2% of the Neisseria meningitidis genome consists of small DNA insertion sequences known as Correia or nemis elements, which feature TIRs (terminal inverted repeats) of 26-27 bp in length....
19.
De Gregorio E, Abrescia C, Carlomagno M, Di Nocera P
Infect Immun
. 2003 Jun;
71(7):4217-21.
PMID: 12819122
Neisseria miniature insertion sequences (nemis) are miniature DNA insertion sequences found in Neisseria species. Out of 57 elements closely flanking cellular genes analyzed by PCR, most were conserved in Neisseria...
20.
De Gregorio E, Abrescia C, Carlomagno M, Di Nocera P
Biochim Biophys Acta
. 2002 May;
1576(1-2):39-44.
PMID: 12031482
About 2% of the Neisseria meningitidis genome is made up by nemis, short DNA sequences which feature long terminal inverted repeats (TIRs). Most nemis are interspersed with single-copy DNA and...