Pavol Skubak
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Explore the profile of Pavol Skubak including associated specialties, affiliations and a list of published articles.
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18
Citations
5354
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Recent Articles
1.
Skubak P
Acta Crystallogr D Struct Biol
. 2024 Jun;
80(Pt 7):528-534.
PMID: 38935341
When solving a structure of a protein from single-wavelength anomalous diffraction X-ray data, the initial phases obtained by phasing from an anomalously scattering substructure usually need to be improved by...
2.
Agirre J, Atanasova M, Bagdonas H, Ballard C, Basle A, Beilsten-Edmands J, et al.
Acta Crystallogr D Struct Biol
. 2023 Jun;
79(Pt 6):449-461.
PMID: 37259835
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a...
3.
Pannu N, Skubak P
Acta Crystallogr D Struct Biol
. 2023 Mar;
79(Pt 4):339-344.
PMID: 36974967
To determine a substructure from single-wavelength anomalous diffraction (SAD) data using Patterson or direct methods, the substructure-factor amplitude (|F|) is first estimated. Currently, the absolute value of the Bijvoet difference...
4.
Krissinel E, Lebedev A, Uski V, Ballard C, Keegan R, Kovalevskiy O, et al.
Acta Crystallogr D Struct Biol
. 2022 Sep;
78(Pt 9):1079-1089.
PMID: 36048148
Nowadays, progress in the determination of three-dimensional macromolecular structures from diffraction images is achieved partly at the cost of increasing data volumes. This is due to the deployment of modern...
5.
Skubak P, Arac D, Bowler M, Correia A, Hoelz A, Larsen S, et al.
IUCrJ
. 2018 May;
5(Pt 2):166-171.
PMID: 29765606
Determining macromolecular structures from X-ray data with resolution worse than 3 Å remains a challenge. Even if a related starting model is available, its incompleteness or its bias together with...
6.
Skubak P
Acta Crystallogr D Struct Biol
. 2018 Mar;
74(Pt 2):117-124.
PMID: 29533237
Thus far, the application of phase-retrieval methods in crystallography has mainly been aimed at variants of charge flipping or structure-factor flipping. In this work, the relaxed averaged alternating reflections (RAAR)...
7.
Potterton L, Agirre J, Ballard C, Cowtan K, Dodson E, Evans P, et al.
Acta Crystallogr D Struct Biol
. 2018 Mar;
74(Pt 2):68-84.
PMID: 29533233
The CCP4 (Collaborative Computational Project, Number 4) software suite for macromolecular structure determination by X-ray crystallography groups brings together many programs and libraries that, by means of well established conventions,...
8.
Kozlov G, Wong K, Wang W, Skubak P, Munoz-Escobar J, Liu Y, et al.
Biochem Biophys Res Commun
. 2017 Nov;
495(1):1002-1007.
PMID: 29175332
Legionella pneumophila is a pathogen, causing severe pneumonia in humans called Legionnaires' disease. AnkC (LegA12) is a poorly characterized 495-residue effector protein conserved in multiple Legionella species. Here, we report...
9.
Diaz-Moreno I, Hulsker R, Skubak P, Foerster J, Cavazzini D, Finiguerra M, et al.
Biochim Biophys Acta
. 2014 Apr;
1837(8):1305-15.
PMID: 24685428
The rapid transfer of electrons in the photosynthetic redox chain is achieved by the formation of short-lived complexes of cytochrome b6f with the electron transfer proteins plastocyanin and cytochrome c6....
10.
Skubak P, Pannu N
Nat Commun
. 2013 Nov;
4:2777.
PMID: 24231803
Determining new protein structures from X-ray diffraction data at low resolution or with a weak anomalous signal is a difficult and often an impossible task. Here we propose a multivariate...