Patrick J Biggs
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Explore the profile of Patrick J Biggs including associated specialties, affiliations and a list of published articles.
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109
Citations
1783
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Recent Articles
1.
Heydari A, Kim N, Biggs P, Horswell J, Gielen G, Siggins A, et al.
Antibiotics (Basel)
. 2025 Feb;
14(2).
PMID: 40001435
Background/objectives: Agricultural soils accumulate inorganic contaminants from the application of phosphate fertilisers. An airstrip located at Belmont Regional Park (BRP), near Wellington, New Zealand, has been found to have a...
2.
Ogbuigwe P, Biggs P, Garcia-Ramirez J, Knox M, Pita A, Velathanthir N, et al.
J Infect
. 2025 Jan;
90(2):106427.
PMID: 39889855
Cryptosporidiosis is a disease caused by the parasite Cryptosporidium. Globally, it is a leading cause of diarrhoea and a notifiable disease in New Zealand. Molecular analyses of Cryptosporidium isolated from...
3.
Gray H, Biggs P, Midwinter A, Rogers L, Fayaz A, Akhter R, et al.
Microb Genom
. 2025 Jan;
11(1.
PMID: 39791259
In Aotearoa New Zealand, urinary tract infections in humans are commonly caused by extended-spectrum beta-lactamase (ESBL)-producing . This group of antimicrobial-resistant bacteria are often multidrug resistant. However, there is limited...
4.
Cookson A, Marshall J, Biggs P, Rogers L, Collis R, Devane M, et al.
Sci Rep
. 2024 Dec;
14(1):32099.
PMID: 39738760
Understanding the composition of complex Escherichia coli populations from the environment is necessary for identifying strategies to reduce the impacts of fecal contamination and protect public health. Metabarcoding targeting the...
5.
Cookson A, Burgess S, Midwinter A, Marshall J, Moinet M, Rogers L, et al.
Environ Microbiol
. 2024 Dec;
26(12):e70016.
PMID: 39680962
This study investigated the diversity of thermophilic Campylobacter species isolated from three New Zealand freshwater catchments affected by pastoral and urban activities. Utilising matrix-assisted laser desorption ionisation-time of flight and...
6.
Grana-Baumgartner A, Dukkipati V, Biggs P, Kenyon P, Blair H, Pickering N, et al.
J Anim Sci
. 2024 Dec;
PMID: 39673383
Skin thickness was found to be moderately heritable and genetically associated with lamb survival in a previous study on Romney sheep. The aims of this study were to estimate the...
7.
Smith H, Biggs P, French N, Smith A, Marshall J
PeerJ Comput Sci
. 2024 Dec;
10:e2445.
PMID: 39650463
Performance of random forest classification models is often assessed and interpreted using out-of-bag (OOB) samples. Observations which are OOB when a tree is trained may serve as a test set...
8.
Cribb D, Biggs P, McLure A, Wallace R, French N, Glass K, et al.
Microb Genom
. 2024 Nov;
10(11).
PMID: 39499243
We used genomic and epidemiological data to assess and compare the population structure and origins of a major foodborne pathogen, in two neighbouring countries with strong trade and cultural links,...
9.
Mahoney-Kurpe S, Palevich N, Gagic D, Biggs P, Reid P, Altshuler I, et al.
mSystems
. 2024 Oct;
9(11):e0086424.
PMID: 39470249
Importance: In ruminants, the rumen microbial community plays a critical role in nutrition through the fermentation of feed to provide vital energy substrates for the host animal. Propionate is a...
10.
Angelin-Bonnet O, Vignes M, Biggs P, Baldwin S, Thomson S
Genes (Basel)
. 2024 Oct;
15(10).
PMID: 39457368
Background/objectives: We present hidecan, an R package for generating visualisations that summarise the results of one or more genome-wide association studies (GWAS) and differential expression analyses, as well as manually...