Nikola Ristic
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Explore the profile of Nikola Ristic including associated specialties, affiliations and a list of published articles.
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11
Citations
119
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Recent Articles
1.
Philipp M, Moth C, Ristic N, Tiemann J, Seufert F, Panfilova A, et al.
Nucleic Acids Res
. 2024 Apr;
52(W1):W132-W139.
PMID: 38647044
The possible effects of mutations on stability and function of a protein can only be understood in the context of protein 3D structure. The MutationExplorer webserver maps sequence changes onto...
2.
Philipp M, Moth C, Ristic N, Tiemann J, Seufert F, Panfilova A, et al.
bioRxiv
. 2024 Mar;
PMID: 38464310
The possible effects of mutations on stability and function of a protein can only be understood in the context of protein 3D structure. The MutationExplorer webserver maps sequence changes onto...
3.
Staritzbichler R, Ristic N, Stapke T, Hildebrand P
Bioinformatics
. 2023 Apr;
39(4).
PMID: 37018142
Motivation: The SmoothT software and webservice offers the construction of pathways from an ensemble of conformations. The user provides an archive of molecule conformations in Protein Databank (PDB) format, from...
4.
Canzler S, Fischer M, Ulbricht D, Ristic N, Hildebrand P, Staritzbichler R
Bioinform Adv
. 2023 Jan;
2(1):vbac059.
PMID: 36699419
Motivation: Protein-protein interactions (PPIs) play an essential role in a great variety of cellular processes and are therefore of significant interest for the design of new therapeutic compounds as well...
5.
Fischer M, Schwarze B, Ristic N, Scheidt H
Comput Biol Chem
. 2022 Aug;
100:107750.
PMID: 35963075
H NMR order parameters of the acyl chain of phospholipid membranes are an important indicator of the effects of molecules on membrane order, mobility, and permeability. So far, the evaluation...
6.
Staritzbichler R, Yaklich E, Sarti E, Ristic N, Hildebrand P, Forrest L
Nucleic Acids Res
. 2022 May;
50(W1):W29-W35.
PMID: 35609986
The AlignMe web server is dedicated to accurately aligning sequences of membrane proteins, a particularly challenging task due to the strong evolutionary divergence and the low compositional complexity of hydrophobic...
7.
Staritzbichler R, Ristic N, Goede A, Preissner R, Hildebrand P
Nucleic Acids Res
. 2021 Jun;
49(W1):W685-W690.
PMID: 34107038
We present an updated version of the Voronoia service that enables fully automated analysis of the atomic packing density of macromolecules. Voronoia combines previous efforts to analyse 3D protein and...
8.
Mutations in global regulators lead to metabolic selection during adaptation to complex environments
Saxer G, Krepps M, Merkley E, Ansong C, Deatherage Kaiser B, Valovska M, et al.
PLoS Genet
. 2014 Dec;
10(12):e1004872.
PMID: 25501822
Adaptation to ecologically complex environments can provide insights into the evolutionary dynamics and functional constraints encountered by organisms during natural selection. Adaptation to a new environment with abundant and varied...
9.
Yu Y, Ristic N, Nakhleh L
BMC Bioinformatics
. 2014 Feb;
14 Suppl 15:S6.
PMID: 24564257
Background: Phylogenomic analyses involving whole-genome or multi-locus data often entail dealing with incongruent gene trees. In this paper, we consider two causes of such incongruence, namely, incomplete lineage sorting (ILS)...
10.
Barac M, Cabrilo S, Pesic M, Stanojevic S, Pavlicevic M, Macej O, et al.
Int J Mol Sci
. 2012 Jan;
12(12):8372-87.
PMID: 22272078
In this paper, the effects of limited hydrolysis on functional properties, as well as on protein composition of laboratory-prepared pea protein isolates, were investigated. Pea protein isolates were hydrolyzed for...