Nathan Pumplin
Overview
Explore the profile of Nathan Pumplin including associated specialties, affiliations and a list of published articles.
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Articles
22
Citations
1590
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Recent Articles
1.
Nielsen C, Arribas-Hernandez L, Han L, Reichel M, Woessmann J, Daucke R, et al.
Plant Cell
. 2024 Mar;
36(6):2289-2309.
PMID: 38466226
Flowering plant genomes encode four or five DICER-LIKE (DCL) enzymes that produce small interfering RNAs (siRNAs) and microRNAs, which function in RNA interference (RNAi). Different RNAi pathways in plants effect...
2.
Lindsay P, Ivanov S, Pumplin N, Zhang X, Harrison M
Nat Commun
. 2022 Sep;
13(1):5228.
PMID: 36064777
Over 70% of vascular flowering plants engage in endosymbiotic associations with arbuscular mycorrhizal (AM) fungi. VAPYRIN (VPY) is a plant protein that is required for intracellular accommodation of AM fungi...
3.
Angira B, Addison C, Cerioli T, Rebong D, Wang D, Pumplin N, et al.
Plant Genome
. 2020 Oct;
12(3):1-9.
PMID: 33016579
Genomic data from diverse germplasm used for application in targeted breeding germplasm. Six SNPs identified that can characterize all haplotypes present at SD1 locus in diverse rice. Three alleles of...
4.
Jullien P, Grob S, Marchais A, Pumplin N, Chevalier C, Bonnet D, et al.
Plant J
. 2020 Jun;
103(5):1796-1809.
PMID: 32506562
Arabidopsis encodes 10 ARGONAUTE (AGO) effectors of RNA silencing, canonically loaded with either 21-22 nucleotide (nt) long small RNAs (sRNAs) to mediate post-transcriptional gene silencing (PTGS) or 24 nt sRNAs...
5.
Edger P, Poorten T, VanBuren R, Hardigan M, Colle M, McKain M, et al.
Nat Genet
. 2019 Mar;
51(4):765.
PMID: 30842601
In the version of this article originally published, author Joshua R. Puzey was incorrectly listed as having affiliation 7 (School of Plant Sciences, University of Arizona, Tucson, AZ, USA); affiliation...
6.
Edger P, Poorten T, VanBuren R, Hardigan M, Colle M, McKain M, et al.
Nat Genet
. 2019 Feb;
51(3):541-547.
PMID: 30804557
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both descendants from the merger of four diploid progenitor species into a single nucleus more than 1 million years...
7.
Iki T, Clery A, Bologna N, Sarazin A, Brosnan C, Pumplin N, et al.
Mol Plant
. 2018 May;
11(8):1008-1023.
PMID: 29803952
In eukaryotes, the RNase-III Dicer often produces length/sequence microRNA (miRNA) variants, called "isomiRs", owing to intrinsic structural/sequence determinants of the miRNA precursors (pre-miRNAs). In this study, we combined biophysics, genetics...
8.
Bologna N, Iselin R, Abriata L, Sarazin A, Pumplin N, Jay F, et al.
Mol Cell
. 2018 Feb;
69(4):709-719.e5.
PMID: 29398448
Unlike in metazoans, plant microRNAs (miRNAs) undergo stepwise nuclear maturation before engaging cytosolic, sequence-complementary transcripts in association with the silencing effector protein ARGONAUTE1 (AGO1). Since their discovery, how and under...
9.
Tschopp M, Iki T, Brosnan C, Jullien P, Pumplin N
RNA
. 2017 Feb;
23(5):782-797.
PMID: 28232389
Small RNAs play an important role in regulating gene expression through transcriptional and post-transcriptional gene silencing. Biogenesis of small RNAs from longer double-stranded (ds) RNA requires the activity of dicer-like...
10.
Pumplin N, Sarazin A, Jullien P, Bologna N, Oberlin S, Voinnet O
Plant Cell
. 2016 Dec;
28(11):2786-2804.
PMID: 27956586
Plant RNA silencing operates via RNA-directed DNA-methylation (RdDM) to repress transcription or by targeting mRNAs via posttranscriptional gene silencing (PTGS). These pathways rely on distinct Dicer-like (DCL) proteins that process...