Michael Remmert
Overview
Explore the profile of Michael Remmert including associated specialties, affiliations and a list of published articles.
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Articles
12
Citations
9118
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Recent Articles
1.
Muhlbacher W, Mayer A, Sun M, Remmert M, Cheung A, Niesser J, et al.
Proteins
. 2015 Jul;
83(10):1849-58.
PMID: 26219431
CTDK-I is a yeast kinase complex that phosphorylates the C-terminal repeat domain (CTD) of RNA polymerase II (Pol II) to promote transcription elongation. CTDK-I contains the cyclin-dependent kinase Ctk1 (homologous...
2.
Remmert M, Biegert A, Hauser A, Soding J
Nat Methods
. 2011 Dec;
9(2):173-5.
PMID: 22198341
Sequence-based protein function and structure prediction depends crucially on sequence-search sensitivity and accuracy of the resulting sequence alignments. We present an open-source, general-purpose tool that represents both query and database...
3.
Sievers F, Wilm A, Dineen D, Gibson T, Karplus K, Li W, et al.
Mol Syst Biol
. 2011 Oct;
7:539.
PMID: 21988835
Multiple sequence alignments are fundamental to many sequence analysis methods. Most alignments are computed using the progressive alignment heuristic. These methods are starting to become a bottleneck in some analysis...
4.
Soding J, Remmert M
Curr Opin Struct Biol
. 2011 Apr;
21(3):404-11.
PMID: 21458982
Protein sequence comparison methods have grown increasingly sensitive during the last decade and can often identify distantly related proteins sharing a common ancestor some 3 billion years ago. Although cellular...
5.
Alva V, Remmert M, Biegert A, Lupas A, Soding J
Protein Sci
. 2009 Nov;
19(1):124-30.
PMID: 19937658
Many protein classification systems capture homologous relationships by grouping domains into families and superfamilies on the basis of sequence similarity. Superfamilies with similar 3D structures are further grouped into folds....
6.
Hildebrand A, Remmert M, Biegert A, Soding J
Proteins
. 2009 Jul;
77 Suppl 9:128-32.
PMID: 19626712
Automated protein structure prediction is becoming a mainstream tool for biological research. This has been fueled by steady improvements of publicly available automated servers over the last decade, in particular...
7.
Remmert M, Linke D, Lupas A, Soding J
Nucleic Acids Res
. 2009 May;
37(Web Server issue):W446-51.
PMID: 19429691
Outer membrane proteins (OMPs) are the transmembrane proteins found in the outer membranes of Gram-negative bacteria, mitochondria and plastids. Most prediction methods have focused on analogous features, such as alternating...
8.
Agarwal V, Remmert M, Biegert A, Soding J
BMC Struct Biol
. 2008 Nov;
8:51.
PMID: 19025670
Background: During the last years, methods for remote homology detection have grown more and more sensitive and reliable. Automatic structure prediction servers relying on these methods can generate useful 3D...
9.
Soding J, Remmert M, Biegert A, Lupas A
Nucleic Acids Res
. 2006 Jul;
34(Web Server issue):W374-8.
PMID: 16845029
HHsenser is the first server to offer exhaustive intermediate profile searches, which it combines with pairwise comparison of hidden Markov models. Starting from a single protein sequence or a multiple...
10.
Biegert A, Mayer C, Remmert M, Soding J, Lupas A
Nucleic Acids Res
. 2006 Jul;
34(Web Server issue):W335-9.
PMID: 16845021
The MPI Bioinformatics Toolkit is an interactive web service which offers access to a great variety of public and in-house bioinformatics tools. They are grouped into different sections that support...