Marina Haukness
Overview
Explore the profile of Marina Haukness including associated specialties, affiliations and a list of published articles.
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13
Citations
2277
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Recent Articles
1.
Mao Y, Harvey W, Porubsky D, Munson K, Hoekzema K, Lewis A, et al.
Cell
. 2024 Mar;
187(6):1547-1562.e13.
PMID: 38428424
We sequenced and assembled using multiple long-read sequencing technologies the genomes of chimpanzee, bonobo, gorilla, orangutan, gibbon, macaque, owl monkey, and marmoset. We identified 1,338,997 lineage-specific fixed structural variants (SVs)...
2.
Rhie A, Nurk S, Cechova M, Hoyt S, Taylor D, Altemose N, et al.
Nature
. 2023 Aug;
621(7978):344-354.
PMID: 37612512
The human Y chromosome has been notoriously difficult to sequence and assemble because of its complex repeat structure that includes long palindromes, tandem repeats and segmental duplications. As a result,...
3.
Liao W, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, et al.
Nature
. 2023 May;
617(7960):312-324.
PMID: 37165242
Here the Human Pangenome Reference Consortium presents a first draft of the human pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of genetically diverse individuals. These...
4.
Mao Y, Harvey W, Porubsky D, Munson K, Hoekzema K, Lewis A, et al.
bioRxiv
. 2023 Mar;
PMID: 36945442
To better understand the pattern of primate genome structural variation, we sequenced and assembled using multiple long-read sequencing technologies the genomes of eight nonhuman primate species, including New World monkeys...
5.
Jarvis E, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, et al.
Nature
. 2022 Oct;
611(7936):519-531.
PMID: 36261518
The current human reference genome, GRCh38, represents over 20 years of effort to generate a high-quality assembly, which has benefitted society. However, it still has many gaps and errors, and...
6.
Escalona M, VanCampen J, Maurer N, Haukness M, Okhovat M, Harris R, et al.
J Hered
. 2022 Sep;
114(1):35-43.
PMID: 36146896
The Javan gibbon, Hylobates moloch, is an endangered gibbon species restricted to the forest remnants of western and central Java, Indonesia, and one of the rarest of the Hylobatidae family....
7.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze A, Mikheenko A, et al.
Science
. 2022 Mar;
376(6588):44-53.
PMID: 35357919
Since its initial release in 2000, the human reference genome has covered only the euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. Addressing the remaining 8% of the...
8.
Altemose N, Logsdon G, Bzikadze A, Sidhwani P, Langley S, Caldas G, et al.
Science
. 2022 Mar;
376(6588):eabl4178.
PMID: 35357911
Existing human genome assemblies have almost entirely excluded repetitive sequences within and near centromeres, limiting our understanding of their organization, evolution, and functions, which include facilitating proper chromosome segregation. Now,...
9.
Mao Y, Catacchio C, Hillier L, Porubsky D, Li R, Sulovari A, et al.
Nature
. 2021 May;
594(7861):77-81.
PMID: 33953399
The divergence of chimpanzee and bonobo provides one of the few examples of recent hominid speciation. Here we describe a fully annotated, high-quality bonobo genome assembly, which was constructed without...
10.
Warren W, Harris R, Haukness M, Fiddes I, Murali S, Fernandes J, et al.
Science
. 2020 Dec;
370(6523).
PMID: 33335035
The rhesus macaque () is the most widely studied nonhuman primate (NHP) in biomedical research. We present an updated reference genome assembly (Mmul_10, contig N50 = 46 Mbp) that increases...