Luke E Ulrich
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Explore the profile of Luke E Ulrich including associated specialties, affiliations and a list of published articles.
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Recent Articles
1.
Gumerov V, Ulrich L, Zhulin I
Nucleic Acids Res
. 2023 Oct;
52(D1):D647-D653.
PMID: 37791884
Signal transduction systems in bacteria and archaea link environmental stimuli to specific adaptive cellular responses. They control gene expression, motility, biofilm formation, development and other processes that are vital to...
2.
MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems
Gumerov V, Ortega D, Adebali O, Ulrich L, Zhulin I
Nucleic Acids Res
. 2019 Nov;
48(D1):D459-D464.
PMID: 31754718
Bacteria and archaea employ dedicated signal transduction systems that modulate gene expression, second-messenger turnover, quorum sensing, biofilm formation, motility, host-pathogen and beneficial interactions. The updated MiST database provides a comprehensive...
3.
Ulrich L, Zhulin I
Bioinformatics
. 2013 Nov;
30(2):295-7.
PMID: 24234005
Unlabelled: Assembling and/or producing integrated knowledge of sequence features continues to be an onerous and redundant task despite a large number of existing resources. We have developed SeqDepot-a novel database...
4.
van Kessel J, Ulrich L, Zhulin I, Bassler B
mBio
. 2013 Jul;
4(4).
PMID: 23839217
Unlabelled: LuxR-type transcription factors are the master regulators of quorum sensing in vibrios. LuxR proteins are unique members of the TetR superfamily of transcription factors because they activate and repress...
5.
Xie Z, Ulrich L, Zhulin I, Alexandre G
Proc Natl Acad Sci U S A
. 2010 Feb;
107(5):2235-40.
PMID: 20133866
Chemoreceptors provide sensory specificity and sensitivity that enable motile bacteria to seek optimal positions for growth and metabolism in gradients of various physicochemical cues. Despite the abundance of chemoreceptors, little...
6.
Ulrich L, Zhulin I
Nucleic Acids Res
. 2009 Nov;
38(Database issue):D401-7.
PMID: 19900966
The MiST2 database (http://mistdb.com) identifies and catalogs the repertoire of signal transduction proteins in microbial genomes. Signal transduction systems regulate the majority of cellular activities including the metabolism, development, host-recognition,...
7.
Staron A, Sofia H, Dietrich S, Ulrich L, Liesegang H, Mascher T
Mol Microbiol
. 2009 Sep;
74(3):557-81.
PMID: 19737356
The ability of a bacterial cell to monitor and adaptively respond to its environment is crucial for survival. After one- and two-component systems, extracytoplasmic function (ECF) sigma factors - the...
8.
Anderson I, Ulrich L, Lupa B, Susanti D, Porat I, Hooper S, et al.
PLoS One
. 2009 Jun;
4(6):e5797.
PMID: 19495416
Background: Methanomicrobiales is the least studied order of methanogens. While these organisms appear to be more closely related to the Methanosarcinales in ribosomal-based phylogenetic analyses, they are metabolically more similar...
9.
Anderson I, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich L, et al.
BMC Genomics
. 2009 Apr;
10:145.
PMID: 19341479
Background: Staphylothermus marinus is an anaerobic, sulfur-reducing peptide fermenter of the archaeal phylum Crenarchaeota. It is the third heterotrophic, obligate sulfur reducing crenarchaeote to be sequenced and provides an opportunity...
10.
Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich L, et al.
J Bacteriol
. 2008 Feb;
190(8):2957-65.
PMID: 18263724
We report the complete genome of Thermofilum pendens, a deeply branching, hyperthermophilic member of the order Thermoproteales in the archaeal kingdom Crenarchaeota. T. pendens is a sulfur-dependent, anaerobic heterotroph isolated...