Laurel Cooper
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Explore the profile of Laurel Cooper including associated specialties, affiliations and a list of published articles.
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19
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1015
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Recent Articles
1.
Cooper L, Elser J, Laporte M, Arnaud E, Jaiswal P
Nucleic Acids Res
. 2023 Dec;
52(D1):D1548-D1555.
PMID: 38055832
The Planteome project (https://planteome.org/) provides a suite of reference and crop-specific ontologies and an integrated knowledgebase of plant genomics data. The plant genomics data in the Planteome has been obtained...
2.
Thessen A, Cooper L, Swetnam T, Hegde H, Reese J, Elser J, et al.
Front Artif Intell
. 2023 Jun;
6:1201002.
PMID: 37384147
Introduction: Climate change is already affecting ecosystems around the world and forcing us to adapt to meet societal needs. The speed with which climate change is progressing necessitates a massive...
3.
Balhoff J, Carbon S, Ebert D, Gaudet P, Harris N, Mi H, et al.
Genetics
. 2023 Mar;
224(1).
PMID: 36866529
The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the...
4.
Yao E, Blake V, Cooper L, Wight C, Michel S, Cagirici H, et al.
Database (Oxford)
. 2022 May;
2022.
PMID: 35616118
As one of the US Department of Agriculture-Agricultural Research Service flagship databases, GrainGenes (https://wheat.pw.usda.gov) serves the data and community needs of globally distributed small grains researchers for the genetic improvement...
5.
Arnaud E, Laporte M, Kim S, Aubert C, Leonelli S, Miro B, et al.
Patterns (N Y)
. 2020 Nov;
1(7):100105.
PMID: 33205138
Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR...
6.
Walls R, Cooper L, Elser J, Gandolfo M, Mungall C, Smith B, et al.
Front Plant Sci
. 2019 Jun;
10:631.
PMID: 31214208
The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from...
7.
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
Harper L, Campbell J, Cannon E, Jung S, Poelchau M, Walls R, et al.
Database (Oxford)
. 2018 Sep;
2018.
PMID: 30239679
The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management essential. Governmental agencies, publishers and science funders require...
8.
Yeumo E, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, et al.
F1000Res
. 2018 Jan;
6:1843.
PMID: 29333241
In this article, we present a joint effort of the wheat research community, along with data and ontology experts, to develop wheat data interoperability guidelines. Interoperability is the ability of...
9.
Cooper L, Meier A, Laporte M, Elser J, Mungall C, Sinn B, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D1168-D1180.
PMID: 29186578
The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a...
10.
Wang Q, Abdul S, Almeida L, Ananiadou S, Balderas-Martinez Y, Batista-Navarro R, et al.
Database (Oxford)
. 2016 Sep;
2016.
PMID: 27589961
Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators,...