Kouichi Kimura
Overview
Explore the profile of Kouichi Kimura including associated specialties, affiliations and a list of published articles.
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18
Citations
1092
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Recent Articles
1.
Kimura K, Koike A
IEEE/ACM Trans Comput Biol Bioinform
. 2018 Jul;
16(1):3-13.
PMID: 29994538
The Burrows-Wheeler transform (BWT) of short-read data has unexplored potential utilities, such as for efficient and sensitive variation analysis against multiple reference genome sequences, because it does not depend on...
2.
Harimoto N, Yoshizumi T, Shimokawa M, Sakata K, Kimura K, Itoh S, et al.
Hepatol Res
. 2016 Feb;
46(12):1247-1255.
PMID: 26880049
Aim: The present study investigated the effect of sarcopenia on short- and long-term surgical outcomes and identified potential prognostic factors for hepatocellular carcinoma (HCC) following hepatectomy among patients 70 years...
3.
Kimura K, Koike A
BMC Bioinformatics
. 2015 Dec;
16 Suppl 18:S5.
PMID: 26678411
Background: The potential utility of the Burrows-Wheeler transform (BWT) of a large amount of short-read data ("reads") has not been fully studied. The BWT basically serves as a lossless dictionary...
4.
Kimura K, Koike A
Bioinformatics
. 2015 Jan;
31(10):1577-83.
PMID: 25609790
Motivation: Sequence-variation analysis is conventionally performed on mapping results that are highly redundant and occasionally contain undesirable heuristic biases. A straightforward approach to single-nucleotide polymorphism (SNP) analysis, using the Burrows-Wheeler...
5.
Kimura K, Koike A, Nakai K
J Bioinform Comput Biol
. 2012 Jul;
10(4):1250002.
PMID: 22809415
Myers' elegant and powerful bit-parallel dynamic programming algorithm for approximate string matching has a restriction that the query length should be within the word size of the computer, typically 64....
6.
Kimura K, Koike A
Genome Inform
. 2010 Feb;
23(1):60-71.
PMID: 20180262
We introduce a new data structure, a localized suffix array, based on which occurrence information is dynamically represented as the combination of global positional information and local lexicographic order information...
7.
Wakamatsu A, Kimura K, Yamamoto J, Nishikawa T, Nomura N, Sugano S, et al.
DNA Res
. 2009 Nov;
16(6):371-83.
PMID: 19880432
We analyzed diversity of mRNA produced as a result of alternative splicing in order to evaluate gene function. First, we predicted the number of human genes transcribed into protein-coding mRNAs...
8.
Kimura K, Suzuki Y, Sugano S, Koike A
J Comput Biol
. 2009 Sep;
16(11):1601-13.
PMID: 19772398
Abstract We have developed efficient in-practice algorithms for computing rank and select functions on a binary string, based on a novel data structure, a hierarchical binary string with hierarchical accumulatives....
9.
Tani H, Matsuda K, Matsumoto T, Hiramoto I, Okamatsu Y, Takehiro S, et al.
Pediatr Int
. 2009 Apr;
51(4):502-6.
PMID: 19400816
Background: While recent advances in asthma management have enabled adequate control to be frequently achieved in outpatient settings, children whose asthma remains poorly controlled despite outpatient treatment are often referred...
10.
Maruyama Y, Wakamatsu A, Kawamura Y, Kimura K, Yamamoto J, Nishikawa T, et al.
Nucleic Acids Res
. 2008 Dec;
37(Database issue):D762-6.
PMID: 19073703
Completion of human genome sequencing has greatly accelerated functional genomic research. Full-length cDNA clones are essential experimental tools for functional analysis of human genes. In one of the projects of...