Konstantinos T Konstantinidis
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Explore the profile of Konstantinos T Konstantinidis including associated specialties, affiliations and a list of published articles.
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215
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12640
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Recent Articles
1.
Zhao J, Pierre Both J, Konstantinidis K
NAR Genom Bioinform
. 2024 Dec;
6(4):lqae172.
PMID: 39703432
Dimension reduction (DR or embedding) algorithms such as t-SNE and UMAP have many applications in big data visualization but remain slow for large datasets. Here, we further improve the UMAP-like...
2.
Ramos-Barbero M, Aldeguer-Riquelme B, Viver T, Villamor J, Carrillo-Bautista M, Lopez-Pascual C, et al.
ISME J
. 2024 Nov;
18(1).
PMID: 39579348
Viruses shape microbial community structure and activity through the control of population diversity and cell abundances. Identifying and monitoring the dynamics of specific virus-host pairs in nature is hampered by...
3.
Conrad R, Brink C, Viver T, Rodriguez-R L, Aldeguer-Riquelme B, Hatt J, et al.
Nat Commun
. 2024 Nov;
15(1):9906.
PMID: 39548060
Recent genomic analyses have revealed that microbial communities are predominantly composed of persistent, sequence-discrete species and intraspecies units (genomovars), but the mechanisms that create and maintain these units remain unclear....
4.
Zhao X, Gao Z, Peng J, Konstantinidis K, Zhang S
Microbiome
. 2024 Nov;
12(1):238.
PMID: 39543780
Background: Arsenic (As) metabolism pathways and their coupling to nitrogen (N) and carbon (C) cycling contribute to elemental biogeochemical cycling. However, how whole-microbial communities respond to As stress and which...
5.
Bustos-Caparros E, Viver T, Gago J, Rodriguez-R L, Hatt J, Venter S, et al.
ISME J
. 2024 Oct;
18(1).
PMID: 39441989
To understand how extreme halophiles respond to recurrent disturbances, we challenged the communities thriving in salt-saturated (~36% salts) ~230 L brine mesocosms to repeated dilutions down to 13% (D13 mesocosm)...
6.
Lindner B, Choudhury R, Pinamang P, Bingham L, DAmico I, Hatt J, et al.
Environ Sci Technol Lett
. 2024 Sep;
11(9):931-939.
PMID: 39280079
Advancements within fecal source tracking (FST) studies are complicated by a lack of knowledge regarding the genetic content and distribution of fecally shed microbial populations. To address this gap, we...
7.
Qi Q, Ning S, Guo X, Zhao J, Tian R, Gui H, et al.
Glob Chang Biol
. 2024 Sep;
30(9):e17487.
PMID: 39254230
Subsoil is a large organic carbon reservoir, storing more than half of the total soil organic carbon (SOC) globally. Conventionally, subsoil is assumed to not be susceptible to climate change,...
8.
Sudarshan A, Dai Z, Gabrielli M, Oosthuizen-Vosloo S, Konstantinidis K, Pinto A
Environ Sci Technol
. 2024 Sep;
58(37):16475-16487.
PMID: 39235268
Genome-resolved insights into the structure and function of the drinking water microbiome can advance the effective management of drinking water quality. To enable this, we constructed and curated thousands of...
9.
de Almeida Leite R, Martins da Costa E, Cabral Michel D, do Amaral Leite A, de Oliveira-Longatti S, de Lima W, et al.
World J Microbiol Biotechnol
. 2024 Aug;
40(10):311.
PMID: 39198273
Bacteria can solubilize phosphorus (P) through the secretion of low-molecular-weight organic acids and acidification. However, the genes involved in the production of these organic acids are poorly understood. The objectives...
10.
Aldeguer-Riquelme B, Conrad R, Anton J, Rossello-Mora R, Konstantinidis K
mBio
. 2024 Jul;
15(8):e0153624.
PMID: 39037288
Importance: Viral species are composed of an ensemble of intra-species variants whose individual dynamics may have major implications for human and animal health and/or ecosystem functioning. However, the lack of...