Jean F Challacombe
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Explore the profile of Jean F Challacombe including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Mukherjee K, Bowman K, Rainey F, Siddaramappa S, Challacombe J, Moe W
FEMS Microbiol Lett
. 2014 Mar;
354(2):111-8.
PMID: 24673292
The genome sequence of the organohalide-respiring bacterium Dehalogenimonas lykanthroporepellensBL-DC-9(T) contains numerous loci annotated as reductive dehalogenase homologous (rdh) genes based on inferred protein sequence identity with functional dehalogenases of other...
12.
Stubben C, Challacombe J
BMC Bioinformatics
. 2014 Feb;
15:43.
PMID: 24499370
Background: The scientific literature contains millions of microbial gene identifiers within the full text and tables, but these annotations rarely get incorporated into public sequence databases. We propose to utilize...
13.
Challacombe J, Majid S, Deole R, Brettin T, Bruce D, Delano S, et al.
Stand Genomic Sci
. 2013 Aug;
8(2):206-14.
PMID: 23991253
Halorhodospira halophila is among the most halophilic organisms known. It is an obligately photosynthetic and anaerobic purple sulfur bacterium that exhibits autotrophic growth up to saturated NaCl concentrations. The type...
14.
Haley B, Grim C, Hasan N, Taviani E, Chun J, Brettin T, et al.
Environ Microbiol Rep
. 2013 Jun;
2(1):208-16.
PMID: 23766018
Vibrio cholerae O1 El Tor BX 330286 was isolated from a water sample in Australia in 1986, 9 years after an indigenous outbreak of cholera occurred in that region. This...
15.
Siddaramappa S, Challacombe J, Petersen J, Pillai S, Kuske C
BMC Genomics
. 2012 Aug;
13:422.
PMID: 22920915
Background: Francisella tularensis is an intracellular pathogen that causes tularemia in humans and the public health importance of this bacterium has been well documented in recent history. Francisella philomiragia, a...
16.
Siddaramappa S, Challacombe J, Delano S, Green L, Daligault H, Bruce D, et al.
Stand Genomic Sci
. 2012 Jul;
6(2):251-64.
PMID: 22768368
Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium...
17.
Siddaramappa S, Challacombe J, Decastro R, Pfeiffer F, Sastre D, Gimenez M, et al.
BMC Genomics
. 2012 May;
13:165.
PMID: 22559199
Background: Natrialba magadii is an aerobic chemoorganotrophic member of the Euryarchaeota and is a dual extremophile requiring alkaline conditions and hypersalinity for optimal growth. The genome sequence of Nab. magadii...
18.
Siddaramappa S, Challacombe J, Duncan A, Gillaspy A, Carson M, Gipson J, et al.
BMC Genomics
. 2011 Nov;
12:570.
PMID: 22111657
Background: Pneumonia and myocarditis are the most commonly reported diseases due to Histophilus somni, an opportunistic pathogen of the reproductive and respiratory tracts of cattle. Thus far only a few...
19.
Challacombe J, Eichorst S, Hauser L, Land M, Xie G, Kuske C
PLoS One
. 2011 Sep;
6(9):e24882.
PMID: 21949776
Members of the bacterial phylum Acidobacteria are widespread in soils and sediments worldwide, and are abundant in many soils. Acidobacteria are challenging to culture in vitro, and many basic features...
20.
Siddaramappa S, Challacombe J, Petersen J, Pillai S, Hogg G, Kuske C
Appl Environ Microbiol
. 2011 Jun;
77(15):5110-22.
PMID: 21666011
Francisella novicida is a close relative of Francisella tularensis, the causative agent of tularemia. The genomes of F. novicida-like clinical isolates 3523 (Australian strain) and Fx1 (Texas strain) were sequenced...