Jason S Cumbie
Overview
Explore the profile of Jason S Cumbie including associated specialties, affiliations and a list of published articles.
Author names and details appear as published. Due to indexing inconsistencies, multiple individuals may share a name, and a single author may have variations. MedLuna displays this data as publicly available, without modification or verification
Snapshot
Snapshot
Articles
17
Citations
1493
Followers
0
Related Specialties
Related Specialties
Top 10 Co-Authors
Top 10 Co-Authors
Published In
Published In
Affiliations
Affiliations
Soon will be listed here.
Recent Articles
1.
Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
Megraw M, Cumbie J, Ivanchenko M, Filichkin S
Plant Cell
. 2016 Feb;
28(2):286-303.
PMID: 26869700
RNA Polymerase II (Pol II) regulatory cascades involving transcription factors (TFs) and their targets orchestrate the genetic circuitry of every eukaryotic organism. In order to understand how these cascades function,...
2.
Cumbie J, Filichkin S, Megraw M
Plant Methods
. 2015 Sep;
11:42.
PMID: 26339280
Background: Identifying cis-regulatory elements is critical in understanding the direct and indirect regulatory mechanisms of gene expression. Current approaches include DNase-seq, a technique that combines sensitivity to the nonspecific endonuclease...
3.
Cumbie J, Ivanchenko M, Megraw M
BMC Genomics
. 2015 Aug;
16:597.
PMID: 26268438
Background: Identifying the transcription start sites (TSS) of genes is essential for characterizing promoter regions. Several protocols have been developed to capture the 5' end of transcripts via Cap Analysis...
4.
Filichkin S, Cumbie J, Dharmawardhana P, Jaiswal P, Chang J, Palusa S, et al.
Mol Plant
. 2015 Feb;
8(2):207-27.
PMID: 25680774
Environmental stresses profoundly altered accumulation of nonsense mRNAs including intron-retaining (IR) transcripts in Arabidopsis. Temporal patterns of stress-induced IR mRNAs were dissected using both oscillating and non-oscillating transcripts. Broad-range thermal...
5.
Burkhardt A, Buchanan A, Cumbie J, Savory E, Chang J, Day B
Mol Plant Microbe Interact
. 2014 Nov;
28(3):298-309.
PMID: 25372122
Pseudoperonospora cubensis is an obligate pathogen and causative agent of cucurbit downy mildew. To help advance our understanding of the pathogenicity of P. cubensis, we used RNA-Seq to improve the...
6.
Filichkin S, Cumbie J, Dharmawadhana J, Jaiswal P, Chang J, Palusa S, et al.
Mol Plant
. 2014 Nov;
PMID: 25366180
Environmental stresses profoundly altered accumulation of nonsense mRNAs including intron retaining (IR) transcripts in Arabidopsis. Temporal patterns of stress-induced IR mRNAs were dissected using both oscillating and non-oscillating transcripts. Broad...
7.
Kimbrel J, Di Y, Cumbie J, Chang J
Genes (Basel)
. 2014 Apr;
2(4):689-705.
PMID: 24710287
The throughput and single-base resolution of RNA-Sequencing (RNA-Seq) have contributed to a dramatic change in transcriptomic-based inquiries and resulted in many new insights into the complexities of bacterial transcriptomes. RNA-Seq...
8.
Mucyn T, Yourstone S, Lind A, Biswas S, Nishimura M, Baltrus D, et al.
PLoS Pathog
. 2014 Jan;
10(1):e1003807.
PMID: 24391493
Pseudomonas syringae is a phylogenetically diverse species of Gram-negative bacterial plant pathogens responsible for crop diseases around the world. The HrpL sigma factor drives expression of the major P. syringae...
9.
Bushley K, Raja R, Jaiswal P, Cumbie J, Nonogaki M, Boyd A, et al.
PLoS Genet
. 2013 Jul;
9(6):e1003496.
PMID: 23818858
The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044...
10.
Mi G, Di Y, Emerson S, Cumbie J, Chang J
PLoS One
. 2012 Oct;
7(10):e46128.
PMID: 23056249
When assessing differential gene expression from RNA sequencing data, commonly used statistical tests tend to have greater power to detect differential expression of genes encoding longer transcripts. This phenomenon, called...