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Jan Van de Velde

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Articles 16
Citations 398
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Recent Articles
1.
De Clercq I, Van de Velde J, Luo X, Liu L, Storme V, Van Bel M, et al.
Nat Plants . 2021 Apr; 7(4):500-513. PMID: 33846597
Gene regulation is a dynamic process in which transcription factors (TFs) play an important role in controlling spatiotemporal gene expression. To enhance our global understanding of regulatory interactions in Arabidopsis...
2.
Gao Z, Daneva A, Salanenka Y, Van Durme M, Huysmans M, Lin Z, et al.
Nat Plants . 2018 May; 4(6):365-375. PMID: 29808023
Flowers have a species-specific functional life span that determines the time window in which pollination, fertilization and seed set can occur. The stigma tissue plays a key role in flower...
3.
Prince S, Valliyodan B, Ye H, Yang M, Tai S, Hu W, et al.
Plant Cell Environ . 2018 May; 42(1):212-229. PMID: 29749073
Developing crops with better root systems is a promising strategy to ensure productivity in both optimum and stress environments. Root system architectural traits in 397 soybean accessions were characterized and...
4.
Kulkarni S, Vaneechoutte D, Van de Velde J, Vandepoele K
Nucleic Acids Res . 2017 Dec; 46(6):e31. PMID: 29272447
A gene regulatory network (GRN) is a collection of regulatory interactions between transcription factors (TFs) and their target genes. GRNs control different biological processes and have been instrumental to understand...
5.
Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, et al.
Plant Physiol . 2017 Feb; 173(3):1824-1843. PMID: 28167700
Plants sense and integrate a variety of signals from the environment through different interacting signal transduction pathways that involve hormones and signaling molecules. Using () gene expression as a model...
6.
Wilbers R, Westerhof L, Van de Velde J, Smant G, van Raaij D, Sonnenberg A, et al.
Front Immunol . 2016 Dec; 7:519. PMID: 27920777
Mushrooms are well known for their immunomodulating capacities. However, little is known about how mushroom-stimulated dendritic cells (DCs) affect T cells. Therefore, we investigated the effect of mushroom compounds derived...
7.
Van de Velde J, Van Bel M, Vaneechoutte D, Vandepoele K
Plant Physiol . 2016 Jun; 171(4):2586-98. PMID: 27261064
Transcription factors (TFs) regulate gene expression by binding cis-regulatory elements, of which the identification remains an ongoing challenge owing to the prevalence of large numbers of nonfunctional TF binding sites....
8.
Wang F, Muto A, Van de Velde J, Neyt P, Himanen K, Vandepoele K, et al.
Plant Physiol . 2015 Sep; 169(3):2200-14. PMID: 26417009
TETRASPANIN (TET) genes encode conserved integral membrane proteins that are known in animals to function in cellular communication during gamete fusion, immunity reaction, and pathogen recognition. In plants, functional information...
9.
De Witte D, Van de Velde J, Decap D, Van Bel M, Audenaert P, Demeester P, et al.
Bioinformatics . 2015 Aug; 31(23):3758-66. PMID: 26254488
Motivation: The accurate discovery and annotation of regulatory elements remains a challenging problem. The growing number of sequenced genomes creates new opportunities for comparative approaches to motif discovery. Putative binding...
10.
Verkest A, Byzova M, Martens C, Willems P, Verwulgen T, Slabbinck B, et al.
Plant Physiol . 2015 Jun; 168(4):1338-50. PMID: 26082400
To increase both the yield potential and stability of crops, integrated breeding strategies are used that have mostly a direct genetic basis, but the utility of epigenetics to improve complex...