J Stoye
Overview
Explore the profile of J Stoye including associated specialties, affiliations and a list of published articles.
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Snapshot
Articles
18
Citations
1351
Followers
0
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Recent Articles
1.
Pollard D, Bergman C, Stoye J, Celniker S, Eisen M
BMC Bioinformatics
. 2004 Jun;
5:73.
PMID: 15186509
No abstract available.
2.
Sammeth M, Rothganger J, Esser W, Albert J, Stoye J, Harmsen D
Bioinformatics
. 2003 Aug;
19(12):1592-3.
PMID: 12912847
Integrating different alignment strategies, a layout editor and tools deriving phylogenetic trees in a 'multiple alignment environment' helps to investigate and enhance results of multiple sequence alignment by hand. QAlign...
3.
Bergeron A, Heber S, Stoye J
Bioinformatics
. 2002 Oct;
18 Suppl 2:S54-63.
PMID: 12385983
This paper revisits the problem of sorting by reversals with tools developed in the context of detecting common intervals. Mixing the two approaches yields new definitions and algorithms for the...
4.
Kurtz S, Choudhuri J, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R
Nucleic Acids Res
. 2001 Nov;
29(22):4633-42.
PMID: 11713313
The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The REPuter...
5.
Reinert K, Stoye J, Will T
Bioinformatics
. 2000 Dec;
16(9):808-14.
PMID: 11108703
Motivation: Multiple sequence alignment is an important tool in computational biology. In order to solve the task of computing multiple alignments in affordable time, the most commonly used multiple alignment...
6.
Heber S, Stoye J, Frohme M, Hoheisel J, Vingron M
J Comput Biol
. 2000 Dec;
7(3-4):395-408.
PMID: 11108470
In physical mapping, one orders a set of genetic landmarks or a library of cloned fragments of DNA according to their position in the genome. Our approach to physical mapping...
7.
Spang R, Rehmsmeier M, Stoye J
Proc Int Conf Intell Syst Mol Biol
. 2000 Sep;
8:367-75.
PMID: 10977097
We describe a new algorithm for amino acid sequence classification and the detection of remote homologues. The rationale is to exploit both vertical and horizontal information of a multiple alignment...
8.
Kurtz S, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R
Proc Int Conf Intell Syst Mol Biol
. 2000 Sep;
8:228-38.
PMID: 10977084
The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmic support. The REPuter...
9.
Krause A, Stoye J, Vingron M
Nucleic Acids Res
. 1999 Dec;
28(1):270-2.
PMID: 10592244
The SYSTERS (short for SYSTEmatic Re-Searching) protein sequence cluster set consists of the classification of all sequences from SWISS-PROT and PIR into disjoint protein family clusters and hierarchically into superfamily...
10.