J D Wall
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Explore the profile of J D Wall including associated specialties, affiliations and a list of published articles.
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Recent Articles
1.
Rajeev L, Garber M, Zane G, Price M, Dubchak I, Wall J, et al.
Environ Microbiol
. 2018 Dec;
21(2):784-799.
PMID: 30536693
Bacterial genes for molybdenum-containing and tungsten-containing enzymes are often differentially regulated depending on the metal availability in the environment. Here, we describe a new family of transcription factors with an...
2.
Christensen G, Zane G, Kazakov A, Li X, Rodionov D, Novichkov P, et al.
J Bacteriol
. 2014 Oct;
197(1):29-39.
PMID: 25313388
Although the enzymes for dissimilatory sulfate reduction by microbes have been studied, the mechanisms for transcriptional regulation of the encoding genes remain unknown. In a number of bacteria the transcriptional...
3.
Chhabra S, Butland G, Elias D, Chandonia J, Fok O, Juba T, et al.
Appl Environ Microbiol
. 2011 Sep;
77(21):7595-604.
PMID: 21908633
The ability to conduct advanced functional genomic studies of the thousands of sequenced bacteria has been hampered by the lack of available tools for making high-throughput chromosomal manipulations in a...
4.
Pemberton T, Jakobsson M, Conrad D, Coop G, Wall J, Pritchard J, et al.
Ann Hum Genet
. 2008 Jun;
72(Pt 4):535-46.
PMID: 18513279
When performing association studies in populations that have not been the focus of large-scale investigations of haplotype variation, it is often helpful to rely on genomic databases in other populations...
5.
Klonowska A, Clark M, Thieman S, Giles B, Wall J, Fields M
Appl Microbiol Biotechnol
. 2008 Feb;
78(6):1007-16.
PMID: 18265973
Desulfovibrio vulgaris Hildenborough is a well-studied sulfate reducer that can reduce heavy metals and radionuclides [e.g., Cr(VI) and U(VI)]. Cultures grown in a defined medium had a lag period of...
6.
Clark M, He Q, He Z, Huang K, Alm E, Wan X, et al.
Appl Environ Microbiol
. 2006 Aug;
72(8):5578-88.
PMID: 16885312
Desulfovibrio vulgaris was cultivated in a defined medium, and biomass was sampled for approximately 70 h to characterize the shifts in gene expression as cells transitioned from the exponential to...
7.
Pattarkine M, Tanner J, Bottoms C, Lee Y, Wall J
J Mol Biol
. 2006 Apr;
358(5):1314-27.
PMID: 16580681
The structure of the type I tetraheme cytochrome c(3) from Desulfovibrio desulfuricans G20 was determined to 1.5 Angstrom by X-ray crystallography. In addition to the oxidized form, the structure of...
8.
Chhabra S, He Q, Huang K, Gaucher S, Alm E, He Z, et al.
J Bacteriol
. 2006 Feb;
188(5):1817-28.
PMID: 16484192
Desulfovibrio vulgaris Hildenborough belongs to a class of sulfate-reducing bacteria (SRB) and is found ubiquitously in nature. Given the importance of SRB-mediated reduction for bioremediation of metal ion contaminants, ongoing...
9.
Wall J
Curr Opin Genet Dev
. 2001 Oct;
11(6):647-51.
PMID: 11682308
New methods for analyzing sequence polymorphism data have uncovered some striking patterns of linkage disequilibrium in both humans and fruitflies. These methods have revealed examples where the observed amount of...
10.
Frisse L, Hudson R, Bartoszewicz A, Wall J, Donfack J, Di Rienzo A
Am J Hum Genet
. 2001 Sep;
69(4):831-43.
PMID: 11533915
To characterize linkage disequilibrium (LD) levels in human populations, we have analyzed 10 independent noncoding segments in three population samples from the major ethnic groups--that is, Africans, Asians, and Europeans....