Gherman Uritskiy
Overview
Explore the profile of Gherman Uritskiy including associated specialties, affiliations and a list of published articles.
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Articles
13
Citations
297
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Recent Articles
1.
Jain S, Uritskiy G, Mahalingam M, Batra H, Chand S, Trinh H, et al.
Elife
. 2024 Apr;
13.
PMID: 38619110
A productive HIV-1 infection in humans is often established by transmission and propagation of a single transmitted/founder (T/F) virus, which then evolves into a complex mixture of variants during the...
2.
Meyer F, Fritz A, Deng Z, Koslicki D, Lesker T, Gurevich A, et al.
Nat Methods
. 2022 Apr;
19(4):429-440.
PMID: 35396482
Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the Initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The CAMI II challenge engaged the community to...
3.
Bickhart D, Kolmogorov M, Tseng E, Portik D, Korobeynikov A, Tolstoganov I, et al.
Nat Biotechnol
. 2022 Jan;
40(5):711-719.
PMID: 34980911
Microbial communities might include distinct lineages of closely related organisms that complicate metagenomic assembly and prevent the generation of complete metagenome-assembled genomes (MAGs). Here we show that deep sequencing using...
4.
Uritskiy G, Munn A, Dailey M, Gelsinger D, Getsin S, Davila A, et al.
Front Microbiol
. 2020 Nov;
11:578669.
PMID: 33193201
Spatial heterogeneity in microbial communities is observed in all natural ecosystems and can stem from both adaptations to local environmental conditions as well as stochastic processes. Extremophile microbial communities inhabiting...
5.
Uritskiy G, Tisza M, Gelsinger D, Munn A, Taylor J, DiRuggiero J
Environ Microbiol
. 2020 Apr;
23(7):3401-3417.
PMID: 32307861
Microbial communities play essential roles in the biosphere and understanding the mechanisms underlying their functional adaptations to environmental conditions is critical for predicting their behaviour. This aspect of microbiome function...
6.
Gelsinger D, Uritskiy G, Reddy R, Munn A, Farney K, DiRuggiero J
mSystems
. 2020 Feb;
5(1).
PMID: 32019831
Regulatory small RNAs (sRNAs) play large-scale and essential roles in many cellular processes across all domains of life. Microbial sRNAs have been extensively studied in model organisms, but very little...
7.
Sakowski E, Uritskiy G, Cooper R, Gomes M, McLaren M, Meisel J, et al.
mSystems
. 2019 Oct;
4(5).
PMID: 31594828
Accurate predictions across multiple fields of microbiome research have far-reaching benefits to society, but there are few widely accepted quantitative tools to make accurate predictions about microbial communities and their...
8.
Uritskiy G, Getsin S, Munn A, Gomez-Silva B, Davila A, Glass B, et al.
ISME J
. 2019 Jul;
13(11):2737-2749.
PMID: 31273300
Understanding the mechanisms underlying microbial resistance and resilience to perturbations is essential to predict the impact of climate change on Earth's ecosystems. However, the resilience and adaptation mechanisms of microbial...
9.
Trinh H, Gohain N, Pham P, Hamlin C, Song H, Sanders-Buell E, et al.
Cells
. 2019 Jun;
8(6).
PMID: 31174408
In the original version of our article [...].
10.
Trinh H, Gohain N, Pham P, Hamlin C, Song H, Sanders-Buell E, et al.
Cells
. 2019 Apr;
8(4).
PMID: 31010245
Reduced risk of HIV-1 infection correlated with antibody responses to the envelope variable 1 and 2 regions in the RV144 vaccine trial. To understand the relationship between antibody responses, V2...