Frederic B Bastian
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Explore the profile of Frederic B Bastian including associated specialties, affiliations and a list of published articles.
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9
Citations
237
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Recent Articles
1.
Bastian F, Cammarata A, Carsanaro S, Detering H, Huang W, Joye S, et al.
Nucleic Acids Res
. 2024 Dec;
53(D1):D878-D885.
PMID: 39656924
Bgee (https://www.bgee.org/) is a database to retrieve and compare gene expression patterns in multiple animal species. Expression data are integrated and made comparable between species thanks to consistent data annotation...
2.
Ross K, Bastian F, Buys M, Cook C, DEustachio P, Harrison M, et al.
Bioinform Adv
. 2024 May;
4(1):vbae057.
PMID: 38721398
Motivation: Data reuse is a common and vital practice in molecular biology and enables the knowledge gathered over recent decades to drive discovery and innovation in the life sciences. Much...
3.
Bastian F, Roux J, Niknejad A, Comte A, Fonseca Costa S, Mendes de Farias T, et al.
Nucleic Acids Res
. 2020 Oct;
49(D1):D831-D847.
PMID: 33037820
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). It...
4.
Komljenovic A, Roux J, Wollbrett J, Robinson-Rechavi M, Bastian F
F1000Res
. 2018 Nov;
5:2748.
PMID: 30467516
BgeeDB is a collection of functions to import into R re-annotated, quality-controlled and re-processed expression data available in the Bgee database. This includes data from thousands of wild-type healthy samples...
5.
Bastian F, Chibucos M, Gaudet P, Giglio M, Holliday G, Huang H, et al.
Database (Oxford)
. 2015 May;
2015:bav043.
PMID: 25957950
Biocuration has become a cornerstone for analyses in biology, and to meet needs, the amount of annotations has considerably grown in recent years. However, the reliability of these annotations varies;...
6.
Haendel M, Balhoff J, Bastian F, Blackburn D, Blake J, Bradford Y, et al.
J Biomed Semantics
. 2014 Jul;
5:21.
PMID: 25009735
Background: Elucidating disease and developmental dysfunction requires understanding variation in phenotype. Single-species model organism anatomy ontologies (ssAOs) have been established to represent this variation. Multi-species anatomy ontologies (msAOs; vertebrate skeletal,...
7.
Rosikiewicz M, Comte A, Niknejad A, Robinson-Rechavi M, Bastian F
Database (Oxford)
. 2013 Mar;
2013:bat010.
PMID: 23487185
As part of the development of the database Bgee (a dataBase for Gene Expression Evolution), we annotate and analyse expression data from different types and different sources, notably Affymetrix data...
8.
Niknejad A, Comte A, Parmentier G, Roux J, Bastian F, Robinson-Rechavi M
Bioinformatics
. 2012 Jan;
28(7):1017-20.
PMID: 22285560
Motivation: Most anatomical ontologies are species-specific, whereas a framework for comparative studies is needed. We describe the vertebrate Homologous Organs Groups ontology, vHOG, used to compare expression patterns between species....
9.
Parmentier G, Bastian F, Robinson-Rechavi M
Bioinformatics
. 2010 Jun;
26(14):1766-71.
PMID: 20519284
Motivation: The anatomy of model species is described in ontologies, which are used to standardize the annotations of experimental data, such as gene expression patterns. To compare such data between...