Filomeno Sanchez Rodriguez
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Explore the profile of Filomeno Sanchez Rodriguez including associated specialties, affiliations and a list of published articles.
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12
Citations
267
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Recent Articles
1.
Simpkin A, Elliot L, Joseph A, Burnley T, Stevenson K, Sanchez Rodriguez F, et al.
Acta Crystallogr D Struct Biol
. 2025 Feb;
81(Pt 3):105-121.
PMID: 39976565
With the advent of next-generation modelling methods, such as AlphaFold2, structural biologists are increasingly using predicted structures to obtain structure solutions via molecular replacement (MR) or model fitting in single-particle...
2.
Sanchez Rodriguez F, Simpkin A, Chojnowski G, Keegan R, Rigden D
IUCrJ
. 2024 Oct;
11(Pt 6):938-950.
PMID: 39387575
The accuracy of the information in the Protein Data Bank (PDB) is of great importance for the myriad downstream applications that make use of protein structural information. Despite best efforts,...
3.
Dialpuri J, Bagdonas H, Schofield L, Pham P, Holland L, Bond P, et al.
Acta Crystallogr F Struct Biol Commun
. 2024 Jan;
80(Pt 2):30-35.
PMID: 38265073
Owing to the difficulties associated with working with carbohydrates, validating glycan 3D structures prior to deposition into the Protein Data Bank has become a staple of the structure-solution pipeline. The...
4.
Simpkin A, Mesdaghi S, Sanchez Rodriguez F, Elliott L, Murphy D, Kryshtafovych A, et al.
Proteins
. 2023 Sep;
91(12):1616-1635.
PMID: 37746927
The results of tertiary structure assessment at CASP15 are reported. For the first time, recognizing the outstanding performance of AlphaFold 2 (AF2) at CASP14, all single-chain predictions were assessed together,...
5.
Simpkin A, Caballero I, McNicholas S, Stevenson K, Jimenez E, Sanchez Rodriguez F, et al.
Acta Crystallogr D Struct Biol
. 2023 Aug;
79(Pt 9):806-819.
PMID: 37594303
In late 2020, the results of CASP14, the 14th event in a series of competitions to assess the latest developments in computational protein structure-prediction methodology, revealed the giant leap forward...
6.
Agirre J, Atanasova M, Bagdonas H, Ballard C, Basle A, Beilsten-Edmands J, et al.
Acta Crystallogr D Struct Biol
. 2023 Jun;
79(Pt 6):449-461.
PMID: 37259835
The Collaborative Computational Project No. 4 (CCP4) is a UK-led international collective with a mission to develop, test, distribute and promote software for macromolecular crystallography. The CCP4 suite is a...
7.
Sanchez Rodriguez F, Chojnowski G, Keegan R, Rigden D
Acta Crystallogr D Struct Biol
. 2022 Dec;
78(Pt 12):1412-1427.
PMID: 36458613
Determination of protein structures typically entails building a model that satisfies the collected experimental observations and its deposition in the Protein Data Bank. Experimental limitations can lead to unavoidable uncertainties...
8.
Moroz O, Blagova E, Lebedev A, Sanchez Rodriguez F, Rigden D, Tams J, et al.
Acta Crystallogr D Struct Biol
. 2021 Dec;
77(Pt 12):1564-1578.
PMID: 34866612
β-Galactosidases catalyse the hydrolysis of lactose into galactose and glucose; as an alternative reaction, some β-galactosidases also catalyse the formation of galactooligosaccharides by transglycosylation. Both reactions have industrial importance: lactose...
9.
Sanchez Rodriguez F, Mesdaghi S, Simpkin A, Burgos-Marmol J, Murphy D, Uski V, et al.
Bioinformatics
. 2021 Sep;
37(17):2763-2765.
PMID: 34499718
Summary: Covariance-based predictions of residue contacts and inter-residue distances are an increasingly popular data type in protein bioinformatics. Here we present ConPlot, a web-based application for convenient display and analysis...
10.
Simpkin A, Sanchez Rodriguez F, Mesdaghi S, Kryshtafovych A, Rigden D
Proteins
. 2021 Jul;
89(12):1852-1869.
PMID: 34288138
We report here an assessment of the model refinement category of the 14th round of Critical Assessment of Structure Prediction (CASP14). As before, predictors submitted up to five ranked refinements,...