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Fabian Dey

Explore the profile of Fabian Dey including associated specialties, affiliations and a list of published articles. Areas
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Articles 15
Citations 203
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Recent Articles
11.
Dey F, Zhang Q, Petrey D, Honig B
Protein Sci . 2013 Jan; 22(4):359-66. PMID: 23349097
We outline a set of strategies to infer protein function from structure. The overall approach depends on extensive use of homology modeling, the exploitation of a wide range of global...
12.
Wu Y, Punta M, Xiao R, Acton T, Sathyamoorthy B, Dey F, et al.
PLoS One . 2012 Jun; 7(6):e37404. PMID: 22693626
The soluble monomeric domain of lipoprotein YxeF from the Gram positive bacterium B. subtilis was selected by the Northeast Structural Genomics Consortium (NESG) as a target of a biomedical theme...
13.
Fischer M, Zhang Q, Dey F, Chen B, Honig B, Petrey D
Nucleic Acids Res . 2011 Jun; 39(Web Server issue):W357-61. PMID: 21672961
We describe MarkUs, a web server for analysis and comparison of the structural and functional properties of proteins. In contrast to a 'structure in/function out' approach to protein function annotation,...
14.
Dey F, Caflisch A
J Chem Inf Model . 2008 Mar; 48(3):679-90. PMID: 18307332
GANDI (Genetic Algorithm-based de Novo Design of Inhibitors) is a computational tool for automatic fragment-based design of molecules within a protein binding site of known structure. A genetic algorithm and...
15.
Kolb P, Huang D, Dey F, Caflisch A
J Med Chem . 2008 Feb; 51(5):1179-88. PMID: 18271520
The linear interaction energy method with continuum electrostatics (LIECE) is evaluated in depth on five kinases. The two multiplicative coefficients for the van der Waals energy and electrostatic free energy...