Esmeralda Vicedo
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Explore the profile of Esmeralda Vicedo including associated specialties, affiliations and a list of published articles.
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9
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574
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Recent Articles
1.
Vicedo E, Gasik Z, Dong Y, Goldberg T, Rost B
F1000Res
. 2015 Dec;
4:1222.
PMID: 26673203
Recent experiments established that a culture of Saccharomyces cerevisiae (baker's yeast) survives sudden high temperatures by specifically duplicating the entire chromosome III and two chromosomal fragments (from IV and XII)....
2.
Vicedo E, Schlessinger A, Rost B
PLoS One
. 2015 Aug;
10(8):e0133990.
PMID: 26252577
Many prokaryotic organisms have adapted to incredibly extreme habitats. The genomes of such extremophiles differ from their non-extremophile relatives. For example, some proteins in thermophiles sustain high temperatures by being...
3.
Francescatto M, Hermans S, Babaei S, Vicedo E, Borrel A, Meysman P
BMC Bioinformatics
. 2015 Feb;
16 Suppl 3:A1-9.
PMID: 25708611
In this meeting report, we give an overview of the talks, presentations and posters presented at the third European Symposium of the International Society for Computational Biology (ISCB) Student Council....
4.
Rahman F, Wilkins K, Jacobsen A, Junge A, Vicedo E, DeBlasio D, et al.
BMC Bioinformatics
. 2015 Feb;
16 Suppl 2:A1-10.
PMID: 25708534
This report summarizes the scientific content and activities of the annual symposium organized by the Student Council of the International Society for Computational Biology (ISCB), held in conjunction with the...
5.
Kajan L, Yachdav G, Vicedo E, Steinegger M, Mirdita M, Angermuller C, et al.
Biomed Res Int
. 2013 Aug;
2013:398968.
PMID: 23971032
We report the release of PredictProtein for the Debian operating system and derivatives, such as Ubuntu, Bio-Linux, and Cloud BioLinux. The PredictProtein suite is available as a standard set of...
6.
Hamp T, Kassner R, Seemayer S, Vicedo E, Schaefer C, Achten D, et al.
BMC Bioinformatics
. 2013 Mar;
14 Suppl 3:S7.
PMID: 23514582
Background: Any method that de novo predicts protein function should do better than random. More challenging, it also ought to outperform simple homology-based inference. Methods: Here, we describe a few...
7.
Radivojac P, Clark W, Ronnen Oron T, Schnoes A, Wittkop T, Sokolov A, et al.
Nat Methods
. 2013 Jan;
10(3):221-7.
PMID: 23353650
Automated annotation of protein function is challenging. As the number of sequenced genomes rapidly grows, the overwhelming majority of protein products can only be annotated computationally. If computational predictions are...
8.
Schlessinger A, Schaefer C, Vicedo E, Schmidberger M, Punta M, Rost B
Curr Opin Struct Biol
. 2011 Apr;
21(3):412-8.
PMID: 21514145
As an operational definition, we refer to regions in proteins that do not adopt regular three-dimensional structures in isolation, as disordered regions. An antipode to disorder would be 'well-structured' rather...
9.
Schmidberger M, Vicedo E, Mansmann U
Bioinform Biol Insights
. 2010 Feb;
3:83-7.
PMID: 20140068
Microarray data repositories as well as large clinical applications of gene expression allow to analyse several hundreds of microarrays at one time. The preprocessing of large amounts of microarrays is...