Dongjie Zhu
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Explore the profile of Dongjie Zhu including associated specialties, affiliations and a list of published articles.
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Articles
32
Citations
636
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Recent Articles
1.
Wang Y, Sun Y, Lin B, Zhang H, Luo X, Liu Y, et al.
BMC Bioinformatics
. 2025 Feb;
26(1):46.
PMID: 39930351
Background: A massive amount of protein sequences have been obtained, but their functions remain challenging to discern. In recent research on protein function prediction, Protein-Protein Interaction (PPI) Networks have played...
2.
Sun Y, Zhu D, Wang Y, Fu Y, Tian Z
Neural Netw
. 2024 Oct;
181:106645.
PMID: 39395234
Graph Neural Networks (GNNs) have emerged as the most powerful weapon for various graph tasks due to the message-passing mechanism's great local information aggregation ability. However, over-smoothing has always hindered...
3.
Zhu D, Cao W, Li J, Wu C, Cao D, Zhang X
Sci Adv
. 2024 Jul;
10(30):eadn0092.
PMID: 39058771
Reconstruction maps of cryo-electron microscopy (cryo-EM) exhibit distortion when the cryo-EM dataset is incomplete, usually caused by unevenly distributed orientations. Prior efforts had been attempted to address this preferred orientation...
4.
Wang X, Xiao L, Zheng K, Zhao C, Liu M, Yao T, et al.
Sensors (Basel)
. 2024 May;
24(10).
PMID: 38793923
This article proposes a new self-calibration method for circular encoders based on inertia and a single read-head. The velocity curves of the circular encoder are fitted with polynomials and, based...
5.
Wang X, Liu M, Yao T, Zheng K, Zhao C, Xiao L, et al.
Sensors (Basel)
. 2024 May;
24(9).
PMID: 38732839
Double-flank measurement is the most commonly used method for full inspection of mass-produced gears and has high measurement efficiency, but it cannot obtain the analytical parameters and is not helpful...
6.
Wang X, Liu M, Yao T, Zheng K, Zhao C, Xiao L, et al.
Sensors (Basel)
. 2023 Dec;
23(24).
PMID: 38139574
Double-flank measurement is the most commonly used full inspection method on the shop floor. However, the double-flank measurement method cannot measure analytical parameters such as pitch deviations and profile deviations,...
7.
Wang X, Yao T, Liu M, Zheng K, Zhao C, Xiao L, et al.
Sensors (Basel)
. 2023 Nov;
23(22).
PMID: 38005405
The clarity evaluation function plays a vital role in the autofocus technique. The accuracy and efficiency of the image clarity evaluation function directly affects the accuracy of autofocus and the...
8.
Zhu D, Cao D, Zhang X
Structure
. 2023 Oct;
31(11):1348-1359.
PMID: 37797619
Before the resolution revolution, cryoelectron microscopy (cryo-EM) single-particle analysis (SPA) already achieved resolutions beyond 4 Å for certain icosahedral viruses, enabling ab initio atomic model building of these viruses. As...
9.
Wu C, Shi H, Zhu D, Fan K, Zhang X
QRB Discov
. 2023 Aug;
2:e11.
PMID: 37529673
When biological samples are first exposed to electrons in cryo-electron microcopy (cryo-EM), proteins exhibit a rapid 'burst' phase of beam-induced motion that cannot be corrected with software. This lowers the...
10.
Yang Q, Wu C, Zhu D, Li J, Cheng J, Zhang X
Structure
. 2023 Aug;
31(10):1275-1281.e4.
PMID: 37527655
Focused ion beam (FIB) is widely used for thinning frozen cells to produce lamellae for cryo-electron microscopy imaging and for protein structures study in vivo. However, FIB damages the lamellae...