Dmitry N Ivankov
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Explore the profile of Dmitry N Ivankov including associated specialties, affiliations and a list of published articles.
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Citations
878
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Recent Articles
11.
Ivankov D, Finkelstein A
Biomolecules
. 2020 Feb;
10(2).
PMID: 32041303
"How do proteins fold?" Researchers have been studying different aspects of this question for more than 50 years. The most conceptual aspect of the problem is how protein can find...
12.
Esteban L, Lonishin L, Bobrovskiy D, Leleytner G, Bogatyreva N, Kondrashov F, et al.
Bioinformatics
. 2019 Nov;
PMID: 31742320
Motivation: Epistasis, the context-dependence of the contribution of an amino acid substitution to fitness, is common in evolution. To detect epistasis, fitness must be measured for at least four genotypes:...
13.
Pokusaeva V, Usmanova D, Putintseva E, Espinar L, Sarkisyan K, Mishin A, et al.
PLoS Genet
. 2019 Apr;
15(4):e1008079.
PMID: 30969963
Characterizing the fitness landscape, a representation of fitness for a large set of genotypes, is key to understanding how genetic information is interpreted to create functional organisms. Here we determined...
14.
Usmanova D, Bogatyreva N, Arino Bernad J, Eremina A, Gorshkova A, Kanevskiy G, et al.
Bioinformatics
. 2018 May;
34(21):3653-3658.
PMID: 29722803
Motivation: Computational prediction of the effect of mutations on protein stability is used by researchers in many fields. The utility of the prediction methods is affected by their accuracy and...
15.
Ivankov D
PLoS One
. 2017 Aug;
12(8):e0182525.
PMID: 28800638
In the course of evolution, genes traverse the nucleotide sequence space, which translates to a trajectory of changes in the protein sequence in protein sequence space. The correspondence between regions...
16.
Finkelstein A, Badretdin A, Galzitskaya O, Ivankov D, Bogatyreva N, Garbuzynskiy S
Phys Life Rev
. 2017 Feb;
21:56-71.
PMID: 28190683
The ability of protein chains to spontaneously form their spatial structures is a long-standing puzzle in molecular biology. Experimentally measured folding times of single-domain globular proteins range from microseconds to...
17.
Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, et al.
Nature
. 2016 May;
533(7603):397-401.
PMID: 27193686
Fitness landscapes depict how genotypes manifest at the phenotypic level and form the basis of our understanding of many areas of biology, yet their properties remain elusive. Previous studies have...
18.
Corrales M, Cusco P, Usmanova D, Chen H, Bogatyreva N, Filion G, et al.
PLoS One
. 2015 Nov;
10(11):e0143166.
PMID: 26606303
The prediction of protein folding rates is a necessary step towards understanding the principles of protein folding. Due to the increasing amount of experimental data, numerous protein folding models and...
19.
Ivankov D, Finkelstein A, Kondrashov F
Curr Opin Struct Biol
. 2014 Jul;
26:104-12.
PMID: 24981969
The study of molecular evolution is important because it reveals how protein functions emerge and evolve. Recently, several types of studies indicated that substitutions in molecular evolution occur in a...
20.
Ivankov D, Bogatyreva N, Honigschmid P, Dislich B, Hogl S, Kuhn P, et al.
Nucleic Acids Res
. 2013 Jun;
41(Web Server issue):W459-64.
PMID: 23729472
Regulated intramembrane proteolysis (RIP) is a critical mechanism for intercellular communication and regulates the function of membrane proteins through sequential proteolysis. RIP typically starts with ectodomain shedding of membrane proteins...