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Dmitriy Shin

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Citations 122
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Recent Articles
1.
Giannaris P, Al-Taie Z, Kovalenko M, Thanintorn N, Kholod O, Innokenteva Y, et al.
J Pathol Inform . 2020 Mar; 11:4. PMID: 32166042
Background: Free-text sections of pathology reports contain the most important information from a diagnostic standpoint. However, this information is largely underutilized for computer-based analytics. The vast majority of NLP-based methods...
2.
Al-Taie Z, Thanintorn N, Ersoy I, Kholod O, Taylor K, Hammer R, et al.
AMIA Jt Summits Transl Sci Proc . 2018 Jun; 2017:35-44. PMID: 29888036
Pathway-based analysis holds promise to be instrumental in precision and personalized medicine analytics. However, the majority of pathway-based analysis methods utilize "fixed" or "rigid" data sets that limit their ability...
3.
Shin D, Kovalenko M, Ersoy I, Li Y, Doll D, Shyu C, et al.
J Pathol Inform . 2017 Aug; 8:29. PMID: 28828200
Background: Visual heuristics of pathology diagnosis is a largely unexplored area where reported studies only provided a qualitative insight into the subject. Uncovering and quantifying pathology visual and nonvisual diagnostic...
4.
Tenenbaum J, Avillach P, Benham-Hutchins M, Breitenstein M, Crowgey E, Hoffman M, et al.
J Am Med Inform Assoc . 2016 Apr; 23(4):791-5. PMID: 27107452
The recent announcement of the Precision Medicine Initiative by President Obama has brought precision medicine (PM) to the forefront for healthcare providers, researchers, regulators, innovators, and funders alike. As technologies...
5.
Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, et al.
Pac Symp Biocomput . 2016 Jan; 21:417-28. PMID: 26776205
Realization of precision medicine ideas requires significant research effort to be able to spot subtle differences in complex diseases at the molecular level to develop personalized therapies. It is especially...
6.
Kabytaev K, Durairaj A, Shin D, Rohlfing C, Connolly S, Little R, et al.
J Sep Sci . 2016 Jan; 39(4):676-81. PMID: 26717885
A liquid chromatography with mass spectrometry on-line platform that includes the orthogonal techniques of ion exchange and reversed phase chromatography is applied for C-peptide analysis. Additional improvement is achieved by...
7.
Shin D, Arthur G, Popescu M, Korkin D, Shyu C
J Biomed Inform . 2014 Aug; 52:394-405. PMID: 25150201
Objectives: We developed Resource Description Framework (RDF)-induced InfluGrams (RIIG) - an informatics formalism to uncover complex relationships among biomarker proteins and biological pathways using the biomedical knowledge bases. We demonstrate...
8.
Chen Z, Shin D, Chen S, Mikhail K, Hadass O, Tomlison B, et al.
PLoS One . 2014 Mar; 9(3):e92133. PMID: 24637518
Quantitative assessment of serial brain sections provides an objective measure of neurological events at cellular and molecular levels but is difficult to implement in experimental neuroscience laboratories because of variation...
9.
Hadass O, Tomlinson B, Gooyit M, Chen S, Purdy J, Walker J, et al.
PLoS One . 2013 Nov; 8(10):e76904. PMID: 24194849
Traumatic brain injury (TBI) is a leading cause of death and long-term disability. Following the initial insult, severe TBI progresses to a secondary injury phase associated with biochemical and cellular...
10.
Shin D, Arthur G, Caldwell C, Popescu M, Petruc M, Diaz-Arias A, et al.
J Pathol Inform . 2012 Mar; 3:1. PMID: 22439121
Background: Immunohistochemistry (IHC) is an important tool to identify and quantify expression of certain proteins (antigens) to gain insights into the molecular processes in a diseased tissue. However, it is...