Denis Jacob Machado
Overview
Explore the profile of Denis Jacob Machado including associated specialties, affiliations and a list of published articles.
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Articles
18
Citations
102
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0
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Recent Articles
11.
Jacob Machado D, Marques F, Jimenez-Ferbans L, Grant T
Cladistics
. 2021 Dec;
38(3):392-401.
PMID: 34932221
In maximum likelihood (ML), the support for a clade can be calculated directly as the likelihood ratio (LR) or log-likelihood difference (S, LLD) of the best trees with and without...
12.
Jacob Machado D, Scott R, Guirales S, Janies D
Cladistics
. 2021 Sep;
37(5):461-488.
PMID: 34570933
The severe acute respiratory syndrome coronavirus (SARS-CoV) emerged in humans in 2002. Despite reports showing Chiroptera as the original animal reservoir of SARS-CoV, many argue that Carnivora-hosted viruses are the...
13.
Jacob Machado D, Castroviejo-Fisher S, Grant T
Mol Phylogenet Evol
. 2020 Sep;
154:106966.
PMID: 32971285
Although numerous studies have demonstrated the theoretical and empirical importance of treating gaps as insertion/deletion (indel) events in phylogenetic analyses, the standard approach to maximum likelihood (ML) analysis employed in...
14.
de Bernadi Schneider A, Jacob Machado D, Guirales S, Janies D
Viruses
. 2020 Aug;
12(8).
PMID: 32824044
Responding to the ongoing and severe public health threat of viruses of the family , including dengue, hepatitis C, West Nile, yellow fever, and Zika, demands a greater understanding of...
15.
Mashanov V, Akiona J, Khoury M, Ferrier J, Reid R, Jacob Machado D, et al.
PLoS One
. 2020 May;
15(5):e0232981.
PMID: 32396580
Cell signaling pathways play key roles in coordinating cellular events in development. The Notch signaling pathway is highly conserved across all multicellular animals and is known to coordinate a multitude...
16.
Lin J, Tsai M, Kroh A, Trautman A, Jacob Machado D, Chang L, et al.
Genomics
. 2019 Oct;
112(2):1686-1693.
PMID: 31629878
Morphologic and molecular data often lead to different hypotheses of phylogenetic relationships. Such incongruence has been found in the echinoderm class Echinoidea. In particular, the phylogenetic status of the order...
17.
Trevisan B, Alcantara D, Jacob Machado D, Marques F, Lahr D
PeerJ
. 2019 Oct;
7:e7543.
PMID: 31565556
Global loss of biodiversity is an ongoing process that concerns both local and global authorities. Studies of biodiversity mainly involve traditional methods using morphological characters and molecular protocols. However, conventional...
18.
Jacob Machado D, Janies D, Brouwer C, Grant T
Ecol Evol
. 2018 May;
8(8):4011-4018.
PMID: 29721275
We applied a novel strategy to infer sequence circularity and complete assembly of four mitochondrial genomes (mitogenomes) of the frog families Bufonidae (), Dendrobatidae ( and ), and Scaphiopodidae ()....
19.
Jacob Machado D
BMC Bioinformatics
. 2015 Jul;
16:204.
PMID: 26130249
Background: The number and size of tree topologies that are being compared by phylogenetic systematists is increasing due to technological advancements in high-throughput DNA sequencing. However, we still lack tools...