Chinnappa Kodira
Overview
Explore the profile of Chinnappa Kodira including associated specialties, affiliations and a list of published articles.
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Articles
16
Citations
4770
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0
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Recent Articles
1.
Halperin R, Liang W, Kulkarni S, Tassone E, Adkins J, Enriquez D, et al.
Front Oncol
. 2019 Apr;
9:119.
PMID: 30949446
Archival tumor samples represent a rich resource of annotated specimens for translational genomics research. However, standard variant calling approaches require a matched normal sample from the same individual, which is...
2.
Parfrey L, Walters W, Lauber C, Clemente J, Berg-Lyons D, Teiling C, et al.
Front Microbiol
. 2014 Jul;
5:298.
PMID: 24995004
Eukaryotic microbes (protists) residing in the vertebrate gut influence host health and disease, but their diversity and distribution in healthy hosts is poorly understood. Protists found in the gut are...
3.
Wu G, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, et al.
Nat Biotechnol
. 2014 Jun;
32(7):656-62.
PMID: 24908277
Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes--a high-quality reference haploid...
4.
Prufer K, Munch K, Hellmann I, Akagi K, Miller J, Walenz B, et al.
Nature
. 2012 Jun;
486(7404):527-31.
PMID: 22722832
Two African apes are the closest living relatives of humans: the chimpanzee (Pan troglodytes) and the bonobo (Pan paniscus). Although they are similar in many respects, bonobos and chimpanzees differ...
5.
Prochnik S, Marri P, Desany B, Rabinowicz P, Kodira C, Mohiuddin M, et al.
Trop Plant Biol
. 2012 Apr;
5(1):88-94.
PMID: 22523606
The starchy swollen roots of cassava provide an essential food source for nearly a billion people, as well as possibilities for bioenergy, yet improvements to nutritional content and resistance to...
6.
Gianoulis T, Griffin M, Spakowicz D, Dunican B, Alpha C, Sboner A, et al.
PLoS Genet
. 2012 Mar;
8(3):e1002558.
PMID: 22396667
The microbial conversion of solid cellulosic biomass to liquid biofuels may provide a renewable energy source for transportation fuels. Endophytes represent a promising group of organisms, as they are a...
7.
Amselem J, Cuomo C, van Kan J, Viaud M, Benito E, Couloux A, et al.
PLoS Genet
. 2011 Aug;
7(8):e1002230.
PMID: 21876677
Sclerotinia sclerotiorum and Botrytis cinerea are closely related necrotrophic plant pathogenic fungi notable for their wide host ranges and environmental persistence. These attributes have made these species models for understanding...
8.
Kuhl H, Tine M, Beck A, Timmermann B, Kodira C, Reinhardt R
Genomics
. 2011 Jun;
98(3):202-12.
PMID: 21693181
Dicentrarchus labrax is one of the major marine aquaculture species in the European Union. In this study, we have developed a directed-sequencing strategy to sequence three sea bass chromosomes and...
9.
Shulaev V, Sargent D, Crowhurst R, Mockler T, Folkerts O, Delcher A, et al.
Nat Genet
. 2010 Dec;
43(2):109-16.
PMID: 21186353
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic...
10.
Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, et al.
Nat Genet
. 2010 Aug;
42(10):833-9.
PMID: 20802477
We report a high-quality draft genome sequence of the domesticated apple (Malus × domestica). We show that a relatively recent (>50 million years ago) genome-wide duplication (GWD) has resulted in...