Charles Tapley Hoyt
Overview
Explore the profile of Charles Tapley Hoyt including associated specialties, affiliations and a list of published articles.
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Articles
37
Citations
406
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Recent Articles
1.
Mohammad-Taheri S, Navada P, Hoyt C, Zucker J, Sachs K, Gyori B, et al.
Bioinformatics
. 2024 Aug;
40(9).
PMID: 39187941
Summary: We introduce Eliater, a Python package for estimating the effect of perturbation of an upstream molecule on a downstream molecule in a biomolecular network. The estimation takes as input...
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3.
Callahan T, Tripodi I, Stefanski A, Cappelletti L, Taneja S, Wyrwa J, et al.
Sci Data
. 2024 Apr;
11(1):363.
PMID: 38605048
Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenges. Knowledge...
4.
Zucker J, Paneri K, Mohammad-Taheri S, Bhargava S, Kolambkar P, Bakker C, et al.
IEEE Trans Big Data
. 2023 Nov;
7(1):25-37.
PMID: 37981991
Counterfactual inference is a useful tool for comparing outcomes of interventions on complex systems. It requires us to represent the system in form of a structural causal model, complete with...
5.
Gargano M, Matentzoglu N, Coleman B, Addo-Lartey E, Anagnostopoulos A, Anderton J, et al.
Nucleic Acids Res
. 2023 Nov;
52(D1):D1333-D1346.
PMID: 37953324
The Human Phenotype Ontology (HPO) is a widely used resource that comprehensively organizes and defines the phenotypic features of human disease, enabling computational inference and supporting genomic and phenotypic analyses...
6.
Hoyt C, Zdrazil B, Guha R, Jeliazkova N, Martinez-Mayorga K, Nittinger E
J Cheminform
. 2023 Jun;
15(1):62.
PMID: 37391855
No abstract available.
7.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey V, Charoentong P, et al.
Nat Biotechnol
. 2023 Jun;
41(8):1056-1059.
PMID: 37337100
No abstract available.
8.
Hoyt C, Hoyt A, Gyori B
Bioinformatics
. 2023 Mar;
39(4).
PMID: 36916735
Motivation: Biomedical identifier resources (such as ontologies, taxonomies, and controlled vocabularies) commonly overlap in scope and contain equivalent entries under different identifiers. Maintaining mappings between these entries is crucial for...
9.
Gyori B, Hoyt C, Steppi A
Bioinform Adv
. 2023 Jan;
2(1):vbac034.
PMID: 36699362
Summary: Gilda is a software tool and web service that implements a scored string matching algorithm for names and synonyms across entries in biomedical ontologies covering genes, proteins (and their...
10.
Hoyt C, Balk M, Callahan T, Domingo-Fernandez D, Haendel M, Hegde H, et al.
Sci Data
. 2022 Nov;
9(1):714.
PMID: 36402838
The standardized identification of biomedical entities is a cornerstone of interoperability, reuse, and data integration in the life sciences. Several registries have been developed to catalog resources maintaining identifiers for...