Benoit Ballester
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Explore the profile of Benoit Ballester including associated specialties, affiliations and a list of published articles.
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41
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5310
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Recent Articles
21.
Prorok P, Artufel M, Aze A, Coulombe P, Peiffer I, Lacroix L, et al.
Nat Commun
. 2019 Jul;
10(1):3274.
PMID: 31332171
Genome-wide studies of DNA replication origins revealed that origins preferentially associate with an Origin G-rich Repeated Element (OGRE), potentially forming G-quadruplexes (G4). Here, we functionally address their requirements for DNA...
22.
Gheorghe M, Sandve G, Khan A, Cheneby J, Ballester B, Mathelier A
Nucleic Acids Res
. 2019 Jun;
47(14):7715.
PMID: 31251803
No abstract available.
23.
Gheorghe M, Sandve G, Khan A, Cheneby J, Ballester B, Mathelier A
Nucleic Acids Res
. 2018 Dec;
47(4):e21.
PMID: 30517703
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is the most popular assay to identify genomic regions, called ChIP-seq peaks, that are bound in vivo by transcription factors (TFs). These regions are...
24.
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon J, van der Lee R, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D1284.
PMID: 29161433
No abstract available.
25.
Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon J, van der Lee R, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D260-D266.
PMID: 29140473
JASPAR (http://jaspar.genereg.net) is an open-access database of curated, non-redundant transcription factor (TF)-binding profiles stored as position frequency matrices (PFMs) and TF flexible models (TFFMs) for TFs across multiple species in...
26.
Cheneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B
Nucleic Acids Res
. 2017 Nov;
46(D1):D267-D275.
PMID: 29126285
With this latest release of ReMap (http://remap.cisreg.eu), we present a unique collection of regulatory regions in human, as a result of a large-scale integrative analysis of ChIP-seq experiments for hundreds...
27.
Cayrou C, Ballester B, Peiffer I, Fenouil R, Coulombe P, Andrau J, et al.
Genome Res
. 2015 Nov;
25(12):1873-85.
PMID: 26560631
To unveil the still-elusive nature of metazoan replication origins, we identified them genome-wide and at unprecedented high-resolution in mouse ES cells. This allowed initiation sites (IS) and initiation zones (IZ)...
28.
Vanhille L, Griffon A, Maqbool M, Zacarias-Cabeza J, Dao L, Fernandez N, et al.
Nat Commun
. 2015 Apr;
6:6905.
PMID: 25872643
Cell-type specific regulation of gene expression requires the activation of promoters by distal genomic elements defined as enhancers. The identification and the characterization of enhancers are challenging in mammals due...
29.
Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B
Nucleic Acids Res
. 2014 Dec;
43(4):e27.
PMID: 25477382
The large collections of ChIP-seq data rapidly accumulating in public data warehouses provide genome-wide binding site maps for hundreds of transcription factors (TFs). However, the extent of the regulatory occupancy...
30.
Ballester B, Medina-Rivera A, Schmidt D, Gonzalez-Porta M, Carlucci M, Chen X, et al.
Elife
. 2014 Oct;
3:e02626.
PMID: 25279814
As exome sequencing gives way to genome sequencing, the need to interpret the function of regulatory DNA becomes increasingly important. To test whether evolutionary conservation of cis-regulatory modules (CRMs) gives...