B L Farmer
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Explore the profile of B L Farmer including associated specialties, affiliations and a list of published articles.
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Articles
21
Citations
125
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Recent Articles
1.
Drummy L, Farmer B, Naik R
Soft Matter
. 2020 Sep;
3(7):877-882.
PMID: 32900081
Low voltage transmission electron microscopy (LVTEM) and wide angle X-ray scattering (WAXS) are used to independently determine the size of the β-sheet crystalline regions in Bombyx mori silk fibers. The...
2.
Pandey R, Jacobs D, Farmer B
J Chem Phys
. 2017 May;
146(19):195101.
PMID: 28527439
The effect of preferential binding of solute molecules within an aqueous solution on the structure and dynamics of the histone H3.1 protein is examined by a coarse-grained Monte Carlo simulation....
3.
Kitjaruwankul S, Khrutto C, Sompornpisut P, Farmer B, Pandey R
J Chem Phys
. 2016 Oct;
145(13):135101.
PMID: 27782431
Structure of CorA protein and its inner (i.corA) and outer (o.corA) transmembrane (TM) components are investigated as a function of temperature by a coarse-grained Monte Carlo simulation. Thermal response of...
4.
Pandey R, Farmer B
J Chem Phys
. 2014 Nov;
141(17):175103.
PMID: 25381549
Multi-scale aggregation to network formation of interacting proteins (H3.1) are examined by a knowledge-based coarse-grained Monte Carlo simulation as a function of temperature and the number of protein chains, i.e.,...
5.
Pandey R, Farmer B
J Chem Phys
. 2013 Nov;
139(16):164901.
PMID: 24182073
A hierarchical coarse-grained approach is used to study the binding of peptides (P2E: (1)E(2)P(3)L(4)Q(5)L(6)K(7)M) and variants (P2G: (1)G(2)P(3)L(4)Q(5)L(6)K(7)M and P2Q: (1)Q(2)L(3)P(4)M(5)E(6)K(7)L) with a graphene sheet. Simulation-based residue-substrate and hydropathy index-based...
6.
Hissam R, Farmer B, Pandey R
Phys Chem Chem Phys
. 2011 Oct;
13(48):21262-72.
PMID: 22031450
A coarse-grained approach with enhanced representation of amino acid (involving four components, i.e. a central alpha carbon and its side group along with C and N terminals) is used to...
7.
Drummy L, Sharon E Jones , Pandey R, Farmer B, Vaia R, Naik R
ACS Appl Mater Interfaces
. 2010 Apr;
2(5):1492-8.
PMID: 20405826
Here we report on the bioenabled assembly of layered nanohybrids using peptides identified with regard to their affinity to the nanoparticle surface. A dodecamer peptide termed M1, determined from a...
8.
Pandey R, Farmer B
J Chem Phys
. 2010 Apr;
132(12):125101.
PMID: 20370150
A coarse-grained model is used to study the structure and dynamics of a human immunodeficiency virus-1 protease (1DIFA dimer) consisting of 198 residues in an effective solvent medium on a...
9.
Pandey R, Farmer B
J Chem Phys
. 2009 Feb;
130(4):044906.
PMID: 19191412
Energy, mobility, and structural profiles of residues in a specific sequence of human immunodeficiency virus (HIV)-1 protease chain and its global conformation and dynamics are studied by a coarse-grained computer...
10.
Pandey R, Farmer B
Phys Rev E Stat Nonlin Soft Matter Phys
. 2008 Jun;
77(3 Pt 1):031902.
PMID: 18517417
In a coarse-grained description of a protein chain, all of the 20 amino acid residues can be broadly divided into three groups: Hydrophobic (H) , polar (P) , and electrostatic...