B A Shapiro
Overview
Explore the profile of B A Shapiro including associated specialties, affiliations and a list of published articles.
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Articles
111
Citations
685
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Recent Articles
1.
Badu S, Melnik R, Paliy M, Prabhakar S, Sebetci A, Shapiro B
Eur Biophys J
. 2014 Sep;
43(10-11):555-64.
PMID: 25208764
In this study, we construct novel RNA nanoclusters, RNA nanotubes made of several nanorings up to the size of 20 nm, utilizing the molecular dynamics simulation, and study their structural...
2.
Arun S, Kaddour-Djebbar I, Shapiro B, Bollag W
Oncogene
. 2010 Dec;
30(13):1586-96.
PMID: 21132013
Our previous studies demonstrated that protein kinase D (PKD), a serine/threonine kinase implicated in various cell processes, is upregulated in basal cell carcinoma (BCC), supporting a possible tumorigenic role for...
3.
Atha D, Kasprzak W, OConnell C, Shapiro B
Nucleic Acids Res
. 2001 Nov;
29(22):4643-53.
PMID: 11713314
We have analyzed previously three representative p53 single-point mutations by capillary-electrophoresis single-strand conformation polymorphism (CE-SSCP). In the current study, we compared our CE-SSCP results with the potential secondary structures predicted...
4.
Shapiro B, Bengali D, Kasprzak W, Wu J
J Mol Biol
. 2001 Sep;
312(1):27-44.
PMID: 11545583
The massively parallel genetic algorithm (GA) for RNA structure prediction uses the concepts of mutation, recombination, and survival of the fittest to evolve a population of thousands of possible RNA...
5.
Shapiro B, Wu J, Bengali D, Potts M
Bioinformatics
. 2001 Mar;
17(2):137-48.
PMID: 11238069
A massively parallel Genetic Algorithm (GA) has been applied to RNA sequence folding on three different computer architectures. The GA, an evolution-like algorithm that is applied to a large population...
6.
Wu J, Shapiro B
J Biomol Struct Dyn
. 2000 Jan;
17(3):581-95.
PMID: 10636092
RNA folding using the massively parallel genetic algorithm (GA) has been enhanced by the addition of a Boltzmann filter. The filter uses the Boltzmann probability distribution in conjunction with Metropolis'...
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Wang J, Rozen S, Shapiro B, Shasha D, Wang Z, Yin M
J Comput Biol
. 1999 Jul;
6(2):209-18.
PMID: 10421523
DNA sequence classification is the activity of determining whether or not an unlabeled sequence S belongs to an existing class C. This paper proposes two new techniques for DNA sequence...
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