Andrew Rambaut
Overview
Explore the profile of Andrew Rambaut including associated specialties, affiliations and a list of published articles.
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Articles
266
Citations
53051
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Recent Articles
1.
Pekar J, Moshiri N, Lemey P, Crits-Christoph A, Debarre F, Goldstein S, et al.
Virus Evol
. 2025 Mar;
11(1):veaf008.
PMID: 40040925
Understanding the genomic diversity of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) at the outset of the coronavirus disease 2019 pandemic can provide insight into the circumstances leading to its...
2.
Parino F, Gustani-Buss E, Bedford T, Suchard M, Trovao N, Rambaut A, et al.
PNAS Nexus
. 2024 Dec;
4(1):pgae561.
PMID: 39737444
Global seasonal influenza circulation involves a complex interplay between local (seasonality, demography, host immunity) and global factors (international mobility) shaping recurrent epidemic patterns. No studies so far have reconciled the...
3.
Baele G, Carvalho L, Brusselmans M, Dudas G, Ji X, McCrone J, et al.
bioRxiv
. 2024 Dec;
PMID: 39713477
In Bayesian phylogenetic and phylodynamic studies it is common to summarise the posterior distribution of trees with a time-calibrated consensus phylogeny. While the maximum clade credibility (MCC) tree is often...
4.
Li Y, Bollen N, Hong S, Brusselmans M, Gambaro F, Klaps J, et al.
Bioinformatics
. 2024 Dec;
40(12).
PMID: 39626311
Motivation: Bayesian phylogeographic analyses are pivotal in reconstructing the spatio-temporal dispersal histories of pathogens. However, interpreting the complex outcomes of phylogeographic reconstructions requires sophisticated visualization tools. Results: To meet this...
5.
Brusselmans M, Carvalho L, Hong S, Gao J, Matsen Iv F, Rambaut A, et al.
Virus Evol
. 2024 Nov;
10(1):veae081.
PMID: 39534377
Modern phylogenetics research is often performed within a Bayesian framework, using sampling algorithms such as Markov chain Monte Carlo (MCMC) to approximate the posterior distribution. These algorithms require careful evaluation...
6.
Colquhoun R, OToole A, Hill V, McCrone J, Yu X, Nicholls S, et al.
Virus Evol
. 2024 Nov;
10(1):veae083.
PMID: 39493537
In response to the escalating SARS-CoV-2 pandemic, in March 2020 the COVID-19 Genomics UK (COG-UK) consortium was established to enable national-scale genomic surveillance in the UK. By the end of...
7.
Kinganda-Lusamaki E, Amuri-Aziza A, Fernandez-Nunez N, Makangara-Cigolo J, Pratt C, Vakaniaki E, et al.
Cell
. 2024 Oct;
188(1):4-14.e6.
PMID: 39454573
Recent reports raise concerns on the changing epidemiology of mpox in the Democratic Republic of the Congo (DRC). High-quality genomes were generated for 337 patients from 14/26 provinces to document...
8.
Kim S, Kigozi G, Martin M, Galiwango R, Quinn T, Redd A, et al.
Virus Evol
. 2024 Oct;
10(1):veae065.
PMID: 39399152
There is limited data on human immunodeficiency virus (HIV) evolutionary trends in African populations. We evaluated changes in HIV viral diversity and genetic divergence in southern Uganda over a 24-year...
9.
Holtz A, Van Weyenbergh J, Hong S, Cuypers L, OToole A, Dudas G, et al.
BMC Infect Dis
. 2024 Oct;
24(1):1139.
PMID: 39390446
We investigate the emergence, mutation profile, and dissemination of SARS-CoV-2 lineage B.1.214.2, first identified in Belgium in January 2021. This variant, featuring a 3-amino acid insertion in the spike protein...
10.
Mukadi-Bamuleka D, Kinganda-Lusamaki E, Mulopo-Mukanya N, Amuri-Aziza A, OToole A, Modadra-Madakpa B, et al.
medRxiv
. 2024 Oct;
PMID: 39371169
The ongoing national mpox outbreak in the Democratic Republic of the Congo has resulted in more >30,000 suspected cases in the country from January 2023 to August 2024. While these...