Amanda C Perofsky
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Explore the profile of Amanda C Perofsky including associated specialties, affiliations and a list of published articles.
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17
Citations
159
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Recent Articles
1.
Tran-Kiem C, Paredes M, Perofsky A, Frisbie L, Xie H, Kong K, et al.
Nature
. 2025 Mar;
PMID: 40044856
Pathogen genomics can provide insights into underlying infectious disease transmission patterns, but new methods are needed to handle modern large-scale pathogen genome datasets and realize this full potential. In particular,...
2.
Perofsky A, Huddleston J, Hansen C, Barnes J, Rowe T, Xu X, et al.
Elife
. 2024 Sep;
13.
PMID: 39319780
Influenza viruses continually evolve new antigenic variants, through mutations in epitopes of their major surface proteins, hemagglutinin (HA) and neuraminidase (NA). Antigenic drift potentiates the reinfection of previously infected individuals,...
3.
Mathis S, Webber A, Leon T, Murray E, Sun M, White L, et al.
Nat Commun
. 2024 Jul;
15(1):6289.
PMID: 39060259
Accurate forecasts can enable more effective public health responses during seasonal influenza epidemics. For the 2021-22 and 2022-23 influenza seasons, 26 forecasting teams provided national and jurisdiction-specific probabilistic predictions of...
4.
Tran-Kiem C, Paredes M, Perofsky A, Frisbie L, Xie H, Kong K, et al.
medRxiv
. 2024 Jun;
PMID: 38826243
Pathogen genomics can provide insights into underlying infectious disease transmission patterns, but new methods are needed to handle modern large-scale pathogen genome datasets and realize this full potential. In particular,...
5.
Perofsky A, Hansen C, Burstein R, Boyle S, Prentice R, Marshall C, et al.
Nat Commun
. 2024 May;
15(1):4164.
PMID: 38755171
Many studies have used mobile device location data to model SARS-CoV-2 dynamics, yet relationships between mobility behavior and endemic respiratory pathogens are less understood. We studied the effects of population...
6.
Paredes M, Perofsky A, Frisbie L, Moncla L, Roychoudhury P, Xie H, et al.
PLoS Pathog
. 2024 Mar;
20(3):e1012117.
PMID: 38530853
SARS-CoV-2 transmission is largely driven by heterogeneous dynamics at a local scale, leaving local health departments to design interventions with limited information. We analyzed SARS-CoV-2 genomes sampled between February 2020...
7.
Mathis S, Webber A, Leon T, Murray E, Sun M, White L, et al.
medRxiv
. 2024 Jan;
PMID: 38168429
Accurate forecasts can enable more effective public health responses during seasonal influenza epidemics. Forecasting teams were asked to provide national and jurisdiction-specific probabilistic predictions of weekly confirmed influenza hospital admissions...
8.
Perofsky A, Huddleston J, Hansen C, Barnes J, Rowe T, Xu X, et al.
medRxiv
. 2023 Oct;
PMID: 37873362
Influenza viruses continually evolve new antigenic variants, through mutations in epitopes of their major surface proteins, hemagglutinin (HA) and neuraminidase (NA). Antigenic drift potentiates the reinfection of previously infected individuals,...
9.
Paredes M, Perofsky A, Frisbie L, Moncla L, Roychoudhury P, Xie H, et al.
medRxiv
. 2022 Dec;
PMID: 36561171
SARS-CoV-2 transmission is largely driven by heterogeneous dynamics at a local scale, leaving local health departments to design interventions with limited information. We analyzed SARS-CoV-2 genomes sampled between February 2020...
10.
Hansen C, Perofsky A, Burstein R, Famulare M, Boyle S, Prentice R, et al.
JAMA Netw Open
. 2022 Dec;
5(12):e2245861.
PMID: 36484987
Importance: Few US studies have reexamined risk factors for SARS-CoV-2 positivity in the context of widespread vaccination and new variants or considered risk factors for cocirculating endemic viruses, such as...