A S Benight
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Explore the profile of A S Benight including associated specialties, affiliations and a list of published articles.
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55
Citations
501
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Recent Articles
1.
Badasyan A, Tonoyan S, Mamasakhlisov Y, Giacometti A, Benight A, Morozov V
Phys Rev E Stat Nonlin Soft Matter Phys
. 2011 Jul;
83(5 Pt 1):051903.
PMID: 21728568
The problem of the helix-coil transition of biopolymers in explicit solvents, such as water, with the ability for hydrogen bonding with a solvent is addressed analytically using a suitably modified...
2.
Badasyan A, Giacometti A, Mamasakhlisov Y, Morozov V, Benight A
Phys Rev E Stat Nonlin Soft Matter Phys
. 2010 Apr;
81(2 Pt 1):021921.
PMID: 20365609
A microscopic spin model is proposed for the phenomenological Zimm-Bragg model for the helix-coil transition in biopolymers. This model is shown to provide the same thermophysical properties of the original...
3.
Badasyan A, Hayrapetyan G, Tonoyan S, Mamasakhlisov Y, Benight A, Morozov V
J Chem Phys
. 2009 Sep;
131(11):115104.
PMID: 19778153
The generalized model of polypeptide chains is extended to describe the helix-coil transition in a system comprised of two chains interacting side-by-side. The Hamiltonian of the model takes into account...
4.
Badasyan A, Tonoyan S, Tsarukyan A, Mamasakhlisov Y, Benight A, Morozov V
J Chem Phys
. 2008 May;
128(19):195101.
PMID: 18500899
The generalized model of polypeptide chains (GMPC) is expanded to simultaneously consider two types of interactions occurring over different scales. This new two scale GMPC is applied in several specific...
5.
Grigoryan A, Mamasakhlisov E, Buryakina T, Tsarukyan A, Benight A, Morozov V
J Chem Phys
. 2007 May;
126(16):165101.
PMID: 17477633
A microscopic Potts-like one-dimensional model with many particle interactions [referred as the generalized model of polypeptide chains (GMPCs)] is developed to investigate cooperativity of DNA sequence dependent melting. For modeling...
6.
Horne M, Fish D, Benight A
Biophys J
. 2006 Sep;
91(11):4133-53.
PMID: 16963510
A general analytical description of the equilibrium and reaction kinetics of DNA multiplex hybridization has been developed. In this approach, multiplex hybridization is considered to be a competitive multichannel reaction...
7.
Badasyan A, Grigoryan A, Mamasakhlisov E, Benight A, Morozov V
J Chem Phys
. 2005 Dec;
123(19):194701.
PMID: 16321104
A microscopic Potts-like one-dimensional model with many-particle interactions is developed to construct a statistical mechanical description of the melting of heterogeneous sequence duplex DNA. For this model, referred as the...
8.
HALL T, Pancoska P, Riccelli P, Mandell K, Benight A
J Am Chem Soc
. 2001 Nov;
123(47):11811-2.
PMID: 11716744
No abstract available.
9.
Kuznetsov S, Shen Y, Benight A, Ansari A
Biophys J
. 2001 Oct;
81(5):2864-75.
PMID: 11606297
A statistical mechanical "zipper" model is applied to describe the equilibrium melting of short DNA hairpins with poly(dT) loops ranging from 4 to 12 bases in the loop. The free...
10.
Benight A, Pancoska P, Owczarzy R, Vallone P, Nesetril J, Riccelli P
Methods Enzymol
. 2001 Aug;
340:165-92.
PMID: 11494848
The analytical methods for characterizing DNA sequence-dependent thermodynamic stability have been reviewed. A set of n-n sequence stability parameters is presented. Examples in which these values are used to calculate...